Jatropha Genome Database

JcCA0128511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0128511.10 + phase: 0 /partial
         (156 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011808001 assembled CDS                                       274   1e-74
GSVIVT01008367001 assembled CDS                                       253   2e-68

>GSVIVT01011808001 assembled CDS
          Length = 426

 Score =  274 bits (700), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 134/156 (85%), Positives = 140/156 (89%)

Query: 1   VKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLSLCIVFLTVELNTFFLKFCLWVPPRNPVI 60
           VKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLSLCIVFLTVELNTFFLKFCLW+PPRNPVI
Sbjct: 271 VKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLSLCIVFLTVELNTFFLKFCLWIPPRNPVI 330

Query: 61  VYRLILWWLIAIPTIREYNSYLQDRKPVKKVGAFCWLSLAXXXXXXXXXXKFGHGLYPNP 120
           VYRLILWWLIAIPTIREYNSYLQDRKPVKKVGAFCWLSLA          KFGHGL+P P
Sbjct: 331 VYRLILWWLIAIPTIREYNSYLQDRKPVKKVGAFCWLSLAICIIELLICIKFGHGLFPKP 390

Query: 121 MPVWLVIFWASIGVALLTFLAIWSWQLHRRLGRKRQ 156
           MP+WLVIFW S GVALL FL +WSWQLH+ LGRKR+
Sbjct: 391 MPLWLVIFWMSAGVALLIFLIVWSWQLHQTLGRKRR 426


>GSVIVT01008367001 assembled CDS
          Length = 430

 Score =  253 bits (647), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 120/155 (77%), Positives = 134/155 (86%)

Query: 1   VKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLSLCIVFLTVELNTFFLKFCLWVPPRNPVI 60
           VKRTLGQFTPAQWDKDEWHPLLGPWRF+QVL LCIVFLTVELNTFFLKFCLW+P +NP+I
Sbjct: 275 VKRTLGQFTPAQWDKDEWHPLLGPWRFVQVLFLCIVFLTVELNTFFLKFCLWIPAQNPLI 334

Query: 61  VYRLILWWLIAIPTIREYNSYLQDRKPVKKVGAFCWLSLAXXXXXXXXXXKFGHGLYPNP 120
           VYRLILWWLIAIPTIREYNS+LQDR P KK+GAFCWLS+A          KFG+GLYPNP
Sbjct: 335 VYRLILWWLIAIPTIREYNSFLQDRTPAKKLGAFCWLSIAACIVELLICIKFGNGLYPNP 394

Query: 121 MPVWLVIFWASIGVALLTFLAIWSWQLHRRLGRKR 155
           MP WLV FW S+GVAL+ FL +WSWQLH+ L +K+
Sbjct: 395 MPRWLVTFWISVGVALVVFLIVWSWQLHKALEQKK 429