Jatropha Genome Database

JcCA0128181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0128181.10 - phase: 0 /partial
         (269 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037470001 assembled CDS                                       237   3e-63
GSVIVT01029786001 assembled CDS                                       174   4e-44
GSVIVT01022828001 assembled CDS                                       167   7e-42

>GSVIVT01037470001 assembled CDS
          Length = 291

 Score =  237 bits (605), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 121/171 (70%), Positives = 147/171 (85%), Gaps = 2/171 (1%)

Query: 45  KIQSAIQSLTSI-TKIPSTILSAQDPASSLLHDSNVSTAISALLREPDSGAGDNNLCRWF 103
           K+QS IQ+L+ I T +P ++ S+ +P+ +LLHD  +++ IS+LLR+P+SGAGDNNLCRW 
Sbjct: 19  KVQSTIQALSHIVTVVPPSLSSSPNPSLALLHDPQITSQISSLLRQPNSGAGDNNLCRWL 78

Query: 104 YDTFQSTSPQLQLVVLRFVPIIAGLYLSRVPLRKPLAGFEAVLLALYAHETTSRNGQAIA 163
           YDTFQS+ P LQLVVLRF+PIIAG+YLSRV LRK LAGFEAVLLALYAHETTSR GQAI 
Sbjct: 79  YDTFQSSDPNLQLVVLRFIPIIAGVYLSRV-LRKHLAGFEAVLLALYAHETTSRAGQAIT 137

Query: 164 VNIPDLSNSSVYHETKETSKNNATDLNLAVISPSLEPHGTVRSTRRARIVG 214
           VN+PDLS+SS+YHETK   K + T+ NLAV+SPSLEPHGTVRS+RRARIVG
Sbjct: 138 VNVPDLSHSSIYHETKAPLKKDDTEQNLAVVSPSLEPHGTVRSSRRARIVG 188


>GSVIVT01029786001 assembled CDS
          Length = 399

 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 88/177 (49%), Positives = 121/177 (68%), Gaps = 3/177 (1%)

Query: 69  PASSLLHDSNVSTAISALLREPDSGAGDNNLCRWFYDTFQSTSPQLQLVVLRFVPIIAGL 128
           PA SLL   +   A+S+ L  P SG+G + LC+W Y+TFQS+ P L+LVVL FVP+++G+
Sbjct: 88  PARSLLQSPDAYDALSSSLSCPRSGSGSDPLCQWLYETFQSSDPDLRLVVLSFVPLLSGI 147

Query: 129 YLSRVPLRKPLAGFEAVLLALYAHETTSRNGQAIAVNIPDLSNSSVYH--ETKETSKNNA 186
           YLSRV     LAGFEAVLLA YA E  +R G+ ++++IPDLS  S+YH   +K TS   A
Sbjct: 148 YLSRVATADSLAGFEAVLLAFYASELKARAGKPVSISIPDLSQPSLYHTPRSKPTSVAPA 207

Query: 187 TDLNLAVISPSLEPHGTVRSTRRARIVGVALELYFSKLSLMPIGSKIDFCEFCELWG 243
              ++ ++SP LEP   V+ST+RA IVGVAL+ Y+ ++S MP  SK+D C+F   W 
Sbjct: 208 RQ-SVGLVSPPLEPQIEVKSTKRACIVGVALDCYYKQISQMPSWSKLDLCQFAAAWA 263


>GSVIVT01022828001 assembled CDS
          Length = 862

 Score =  167 bits (422), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 85/178 (47%), Positives = 118/178 (66%), Gaps = 3/178 (1%)

Query: 69  PASSLLHDSNVSTAISALLREPDSGAGDNNLCRWFYDTFQSTSPQLQLVVLRFVPIIAGL 128
           PA SLL   +V  A+ + L  P SG+G + +C+W Y+TFQS+ P L+LV L F+P+++GL
Sbjct: 658 PARSLLQSPDVYDAVCSSLFSPQSGSGPDPICQWLYETFQSSDPDLRLVALSFIPLVSGL 717

Query: 129 YLSRVPLRKP--LAGFEAVLLALYAHETTSRNGQAIAVNIPDLSNSSVYHETKETSKNNA 186
           YLSRV   +   LAGFEAVLLALYA E  +R G+ ++++IPDLS  S+YH  +    + A
Sbjct: 718 YLSRVVDSRAASLAGFEAVLLALYASELKARGGKPVSISIPDLSQPSLYHTPRSRPSSMA 777

Query: 187 -TDLNLAVISPSLEPHGTVRSTRRARIVGVALELYFSKLSLMPIGSKIDFCEFCELWG 243
            T   + + SP LEP   V+ST+RA IVGVAL+ Y+ ++S MP  SK+D C F   W 
Sbjct: 778 PTGHFIGLASPPLEPQSEVKSTKRACIVGVALDCYYKQISQMPSWSKLDLCRFAAAWA 835