Jatropha Genome Database

JcCA0127891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0127891.20 + phase: 0 
         (345 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031240001 assembled CDS                                       205   2e-53
GSVIVT01029178001 assembled CDS                                       118   4e-27

>GSVIVT01031240001 assembled CDS
          Length = 471

 Score =  205 bits (522), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/160 (58%), Positives = 125/160 (78%)

Query: 183 ILNENGIVQPKKVAFIGSGPMPLTSLVMATHHLKSTHFVNFDIDESANDVARQIVASDTD 242
           +L++N    P K+AF+GSGP+PLTS+V+A++HL +T F N+DID +AN +A  +V+SD D
Sbjct: 260 LLSQNCTHVPSKIAFVGSGPLPLTSIVLASYHLTTTSFHNYDIDPAANSMAAHLVSSDPD 319

Query: 243 LEKRMKFHTCDVMEVKEKFAEYDCIFLAALVGMSKEEKVKILGHIRKYMKAGGNLLVRSA 302
             KRM FHT D+M V  +  EYD ++LAALVGM KEEK++++ H+ K+M  G  L++RSA
Sbjct: 320 FSKRMLFHTTDIMNVTNELKEYDVVYLAALVGMDKEEKIQVMDHLAKHMAPGALLMLRSA 379

Query: 303 NGARAFLYPVIDEDDLIGFEVLSIFHPNNEVINSVVLVRK 342
           +GARAFLYPVID  DL GFEVLSIFHP +EVINSVV+ RK
Sbjct: 380 HGARAFLYPVIDPCDLRGFEVLSIFHPTDEVINSVVVARK 419


>GSVIVT01029178001 assembled CDS
          Length = 160

 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 75/96 (78%)

Query: 62  MASLQKSIFETQIPTEHLIARITEIHNSVSKLDSLRPSKQINALLTNLVKLCILPSSIEI 121
           MASLQ+S  +T + TE LIARI +IH ++ KL+SLRPSKQ+N+L T+LVKLC  PSSI+I
Sbjct: 1   MASLQQSSLKTNVSTELLIARIVQIHANICKLESLRPSKQVNSLFTHLVKLCTPPSSIDI 60

Query: 122 ETLSPQVQEMRNSLINLCGQAEGLLELEFAMFLNKI 157
             L  ++Q +R SLI LCG+AEGLLELEF+ FL  +
Sbjct: 61  TALPEEIQLIRQSLITLCGRAEGLLELEFSTFLTNV 96



 Score =  118 bits (295), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 52/63 (82%), Positives = 58/63 (92%)

Query: 281 VKILGHIRKYMKAGGNLLVRSANGARAFLYPVIDEDDLIGFEVLSIFHPNNEVINSVVLV 340
           VKILGH+RKYMK GG LLVRSA GARAFLYPV++E+DL+GFEVL+IFHP NEVINSVVL 
Sbjct: 96  VKILGHVRKYMKEGGTLLVRSAKGARAFLYPVVEEEDLLGFEVLTIFHPTNEVINSVVLA 155

Query: 341 RKP 343
           RKP
Sbjct: 156 RKP 158