Jatropha Genome Database

JcCA0127871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0127871.10 + phase: 0 /partial
         (336 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015435001 assembled CDS                                       449   e-127
GSVIVT01014467001 assembled CDS                                       138   4e-33

>GSVIVT01015435001 assembled CDS
          Length = 983

 Score =  449 bits (1155), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/330 (65%), Positives = 253/330 (76%), Gaps = 6/330 (1%)

Query: 1   KNYPRIKTIVNKVGTITNEFRVPKFEILAGENDMVTEVKQYGATFKLDYGLVYWNSRLEH 60
           KNYPRIKT+VNKVGTITNEFRVPKFEIL G++DMVTEVKQY ATFKLDY LVYWNSRLEH
Sbjct: 151 KNYPRIKTVVNKVGTITNEFRVPKFEILVGKDDMVTEVKQYRATFKLDYSLVYWNSRLEH 210

Query: 61  EHMRLVSQFKPGETICDMFAGIGPFAIPAAQKGCVVYANDLNPDSFQYLRLNAKLNKVDD 120
           EHMRLVSQF+PG+ ICDMF+G+GPFAIPAAQKGC+VYANDLNPDS +YL++NAK+NKVDD
Sbjct: 211 EHMRLVSQFRPGQIICDMFSGVGPFAIPAAQKGCLVYANDLNPDSIRYLKINAKINKVDD 270

Query: 121 RIFPYSMDARKFISQLMAAPNHENDLESEASALKACENHDLQGTEETKS-----AVDVKE 175
            I+ Y+MDARKFISQLM  P HE   E +   LKA E   +Q   +T+S      V+   
Sbjct: 271 NIWAYNMDARKFISQLMEVPVHEILPEPDVPVLKATEECSIQANVQTESQNGGLTVEAIG 330

Query: 176 APDTVPSDHEGTQDPCRKADTSVTAVKRPSHCFHEENENTHGGAISFTSRRKGSVNKRMR 235
                 S+ +G +  C  AD +V AVK+ S    EEN       +S   RRK  +NKRMR
Sbjct: 331 VHSDDSSNMDGIEGSCTVADDTVAAVKKHSGSCEEENGTYDNATVSVVGRRKDRMNKRMR 390

Query: 236 ASE-LPNTKPWEHVDHVVMNLPASALQFLDAFRGVIKKKDWMGQLPWIHCYCFIRANQTE 294
            SE   N KPWEHVDHV+MNLPASA+QFLDAFRG+I++K W G LPWIHCYCFIRAN+T 
Sbjct: 391 GSESSSNIKPWEHVDHVIMNLPASAIQFLDAFRGLIQRKYWKGSLPWIHCYCFIRANETN 450

Query: 295 ETIISEAESALGACIQDPVFHRVREVAPNK 324
           E IISEAE+AL A IQ+P+ HRVR+VAPNK
Sbjct: 451 EMIISEAETALNASIQEPILHRVRDVAPNK 480


>GSVIVT01014467001 assembled CDS
          Length = 375

 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 96/144 (66%)

Query: 1   KNYPRIKTIVNKVGTITNEFRVPKFEILAGENDMVTEVKQYGATFKLDYGLVYWNSRLEH 60
           KN P+I+T+VNK   I N++R  + E+LAG   +VT V + G  F++D   VYWNSRL  
Sbjct: 131 KNKPKIQTVVNKTDAIHNDYRTMQLEVLAGNRSLVTTVIENGMRFQVDLATVYWNSRLAT 190

Query: 61  EHMRLVSQFKPGETICDMFAGIGPFAIPAAQKGCVVYANDLNPDSFQYLRLNAKLNKVDD 120
           E  RL++ F   + +CD+F+G+GP AI AA+K   VYANDLNP + +YL  N+ LNK++ 
Sbjct: 191 ERQRLLNCFTRNDVVCDVFSGVGPIAISAAKKVKRVYANDLNPYAIEYLESNSVLNKLER 250

Query: 121 RIFPYSMDARKFISQLMAAPNHEN 144
           +I  ++MD R+FI+ +  +   E+
Sbjct: 251 KIKVFNMDGRRFINAMFTSDKAES 274



 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 246 EHVDHVVMNLPASALQFLDAFRGVIKKK--DWMGQLPWIHCYCFIRANQTEETIISEAES 303
           E +  VVMNLP  A +FLDAFRG+ +KK  D   +LP IH Y F +A   E         
Sbjct: 273 ESITQVVMNLPNDAAEFLDAFRGIFRKKSRDKQLKLPMIHVYGFSKAQDPEFDFHQRIRI 332

Query: 304 ALGACIQDPVFHRVREVAPNK 324
           AL     D   HRVR VAP K
Sbjct: 333 ALSEVAVDVEMHRVRLVAPGK 353