Jatropha Genome Database

JcCA0127751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0127751.10 - phase: 0 /partial
         (166 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036958001 assembled CDS                                       308   8e-85

>GSVIVT01036958001 assembled CDS
          Length = 319

 Score =  308 bits (789), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 144/166 (86%), Positives = 159/166 (95%)

Query: 1   IGITGLPLGIFTYVLDRVPPGTVDVILSYCHYSINDSTLLDILPYLKSKGVGIISASPLA 60
           IGITGLPL IFTYVLDRVPPG+VDVILSYCHYSIND+TL D+LPYLKSKGVG+ISASPLA
Sbjct: 154 IGITGLPLEIFTYVLDRVPPGSVDVILSYCHYSINDTTLEDLLPYLKSKGVGVISASPLA 213

Query: 61  MGLLTENGPPEWHPASPELKSACQAAAAYCKEKGKNISKLAMQYSLSNKDISTVLVGMNS 120
           MGLLTE GPPEWHPASPELKSACQAAAA+CKEKGKNISKLAMQ+SLSNKDIS+VLVGMNS
Sbjct: 214 MGLLTERGPPEWHPASPELKSACQAAAAHCKEKGKNISKLAMQFSLSNKDISSVLVGMNS 273

Query: 121 VRQVEENVTAAIELATFGKDQQTLAEIEAIVSPVKNQTWPSGIQHS 166
           ++QVEENV AA ELA FGKD++TL+E+EAI++PVKNQTWPSGIQ S
Sbjct: 274 IKQVEENVAAATELAIFGKDEETLSEVEAILNPVKNQTWPSGIQQS 319