Jatropha Genome Database

JcCA0127661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0127661.10 - phase: 0 /pseudo
         (169 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011763001 assembled CDS                                       238   1e-63

>GSVIVT01011763001 assembled CDS
          Length = 314

 Score =  238 bits (606), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 117/155 (75%), Positives = 128/155 (82%), Gaps = 1/155 (0%)

Query: 1   AMADAAHPACILETRKTAPGLRLVDKWAVLIGGGRNHRMGLFDMVMIKDNHISIAGGIIN 60
           AMADAAHPA ILETRKTAPGLRLVDKWAVLIGGGRNHRMGLFDMV+IKDNHISIAGG+ N
Sbjct: 123 AMADAAHPALILETRKTAPGLRLVDKWAVLIGGGRNHRMGLFDMVLIKDNHISIAGGVTN 182

Query: 61  AIKAVDQYLEQRNLQMXXXXXXXXXXXXXXXXDYTSQTKTSLTRIMLDNMVIPLPNGDVD 120
           A+K+VD YLE+RNLQM                +Y S+TKTSLTRIMLDNMV+PL NGDVD
Sbjct: 183 ALKSVDSYLEKRNLQMEVEIETRTLEEIKDVLEYASKTKTSLTRIMLDNMVVPLLNGDVD 242

Query: 121 VSMLKQAVELINGRFETEASGKCXLLKQXHKIGQT 155
           VSMLK+AVELING+FETEASG    L+  HKIGQT
Sbjct: 243 VSMLKEAVELINGKFETEASGNV-TLETVHKIGQT 276