Jatropha Genome Database

JcCA0127101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0127101.10 - phase: 1 /partial
         (207 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009285001 assembled CDS                                       333   4e-92
GSVIVT01036990001 assembled CDS                                       328   1e-90
GSVIVT01002531001 assembled CDS                                       184   3e-47
GSVIVT01002452001 assembled CDS                                       143   5e-35

>GSVIVT01009285001 assembled CDS
          Length = 263

 Score =  333 bits (853), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 154/204 (75%), Positives = 179/204 (87%)

Query: 4   SNKGVVSTIEGDFSCTVEVQRAIPILKKAYGDHMRKVLHVGPDTCSVVSLLLKEEETEAW 63
           + +  VS ++GDFSCT EV  AIP LKKAYGD M KVLHVGPD+CS+VS LLKEEETEAW
Sbjct: 60  NKQAAVSRVQGDFSCTAEVHWAIPFLKKAYGDSMHKVLHVGPDSCSIVSKLLKEEETEAW 119

Query: 64  GVEPYDIEDVDSHCRALVQKGNVRVADIKFPLPYRPKSFSLVIVSDALDYLSPRYLNRTL 123
           GVEPYDIE+ DS+C++LV KG VRVADIKFPLPYR KSFSLVIVSDALDYLSP+YLN+TL
Sbjct: 120 GVEPYDIEEADSNCKSLVHKGIVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTL 179

Query: 124 PELARVSSEGLIIFTGFPGQHRSKVAEVSKFGKAAKLRSLSWWTRYFIQTSLDENEAAVK 183
           P+LARVS++GLIIF GFPGQ R+KV+EVSKFG+ AKLRS SWW RYF+QTSL+ENEAA+K
Sbjct: 180 PDLARVSADGLIIFAGFPGQQRAKVSEVSKFGRPAKLRSSSWWVRYFVQTSLEENEAAIK 239

Query: 184 KFDQAAAKKSYSPGCQIFHLKAYS 207
           KF+ A  K SY+P CQIFHLK+Y+
Sbjct: 240 KFEPAITKSSYNPSCQIFHLKSYN 263


>GSVIVT01036990001 assembled CDS
          Length = 262

 Score =  328 bits (840), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 150/202 (74%), Positives = 179/202 (88%)

Query: 4   SNKGVVSTIEGDFSCTVEVQRAIPILKKAYGDHMRKVLHVGPDTCSVVSLLLKEEETEAW 63
           S+K  +S +EG  SCT+EVQRA+PILKK YGD M K+LHVGP TCSVVS LLKEE+TEAW
Sbjct: 59  SDKEALSKVEGGVSCTLEVQRALPILKKVYGDSMHKILHVGPYTCSVVSKLLKEEDTEAW 118

Query: 64  GVEPYDIEDVDSHCRALVQKGNVRVADIKFPLPYRPKSFSLVIVSDALDYLSPRYLNRTL 123
           GVEPYDI+D D++C++LV+KG VRVADIKFPLPYR KSFSLVI+SDA DYLSP+YLNRTL
Sbjct: 119 GVEPYDIDDADANCKSLVRKGIVRVADIKFPLPYRAKSFSLVIMSDASDYLSPKYLNRTL 178

Query: 124 PELARVSSEGLIIFTGFPGQHRSKVAEVSKFGKAAKLRSLSWWTRYFIQTSLDENEAAVK 183
           PELARVS+EGL+IF G+PGQHR+KVAE+SKFG+ AKLRS SWW R+F+QTSL+ENEAA K
Sbjct: 179 PELARVSAEGLVIFAGYPGQHRAKVAELSKFGRPAKLRSSSWWIRFFVQTSLEENEAATK 238

Query: 184 KFDQAAAKKSYSPGCQIFHLKA 205
           KF+Q + K+SY P CQ+FHLK+
Sbjct: 239 KFEQTSMKRSYKPACQVFHLKS 260


>GSVIVT01002531001 assembled CDS
          Length = 114

 Score =  184 bits (467), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 82/107 (76%), Positives = 98/107 (91%)

Query: 100 KSFSLVIVSDALDYLSPRYLNRTLPELARVSSEGLIIFTGFPGQHRSKVAEVSKFGKAAK 159
           +SFSLVIVSDALDYLSP+YLN+TLP+LARVSS+GL+IF G PGQ ++KVAE+SKFG+ AK
Sbjct: 7   RSFSLVIVSDALDYLSPKYLNKTLPDLARVSSDGLVIFAGLPGQQKAKVAELSKFGRPAK 66

Query: 160 LRSLSWWTRYFIQTSLDENEAAVKKFDQAAAKKSYSPGCQIFHLKAY 206
           +RS SWW RYF+QTSL+ENEAA+KKFDQAAAKKSY P CQ+FHL +Y
Sbjct: 67  MRSSSWWIRYFVQTSLEENEAAIKKFDQAAAKKSYKPACQVFHLNSY 113


>GSVIVT01002452001 assembled CDS
          Length = 150

 Score =  143 bits (361), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 72/82 (87%)

Query: 2   FGSNKGVVSTIEGDFSCTVEVQRAIPILKKAYGDHMRKVLHVGPDTCSVVSLLLKEEETE 61
           FG +K   S +EGDFSCT+EVQRAIPILKKAYGD MRKVLHVGPDTCSVVS LLKEEETE
Sbjct: 57  FGGDKEAFSKVEGDFSCTLEVQRAIPILKKAYGDSMRKVLHVGPDTCSVVSKLLKEEETE 116

Query: 62  AWGVEPYDIEDVDSHCRALVQK 83
           AWGVEPYDIED D  C++LV+K
Sbjct: 117 AWGVEPYDIEDADGSCKSLVRK 138