Jatropha Genome Database

JcCA0126401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0126401.10 + phase: 0 /pseudo
         (286 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016816001 assembled CDS                                       271   3e-73
GSVIVT01035420001 assembled CDS                                       197   7e-51
GSVIVT01015156001 assembled CDS                                       123   1e-28
GSVIVT01015308001 assembled CDS                                        56   2e-08
GSVIVT01016988001 assembled CDS                                        55   4e-08
GSVIVT01016995001 assembled CDS                                        55   4e-08

>GSVIVT01016816001 assembled CDS
          Length = 506

 Score =  271 bits (692), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 144/274 (52%), Positives = 195/274 (71%), Gaps = 11/274 (4%)

Query: 1   MSPAVAMTLSLGNSICDNSGIATHVEITRLKLVTDAVSLLSDPAKVVSDEAVAVCSGSSD 60
           MSPAV++TLSLG+++CDNSGIATHVEIT+LKLVTD VSLLS PA V+S E+V    G  +
Sbjct: 4   MSPAVSVTLSLGSTLCDNSGIATHVEITQLKLVTDTVSLLSSPATVLSSESVCSGDGIRN 63

Query: 61  DAKNGMEFTTLSESKDGGVGGNDSVPTDAMIQXXXXXXXXXXXXXTNGTISXXXXXXXXG 120
           D K+     + SE+++   G   +   D ++              T+            G
Sbjct: 64  DVKSEPNGVSESEAEEDSGGRRVTFEEDEIL---------AVVDNTSRISHEDLLALVAG 114

Query: 121 SEINLPKSVEIEDMIEDSQIIAKAIIVESSNEVQVPTAKLLIAAVSPNADITDGSELRAS 180
           SEI+LP S+EIE+ +E  QI+AKAII+  S+E +VP  +LL  AV+P+A ++ GS+L+AS
Sbjct: 115 SEISLPNSMEIEN-VEHGQIVAKAIILRESSE-KVPAGELLAVAVNPDAVLSGGSDLKAS 172

Query: 181 AVVLKLPSESNLSKGTSRSVFEIDCVPLWGSVSICGRRPEMEDSLAAVPRFAKIPIKMLI 240
           AVV +L ++ NLSKG+ RSVFE+DC+PLWGSVSI G+RPEMED++AAVPRF + PIKMLI
Sbjct: 173 AVVFQLSTDKNLSKGSVRSVFELDCIPLWGSVSIQGQRPEMEDAVAAVPRFMETPIKMLI 232

Query: 241 GDHVVNGLNESLTHLTSHFFGVYDGHGGAQVHLY 274
           G+  ++G+++  THLT+HFFGVYDGHGG+QV  Y
Sbjct: 233 GNRAIDGMSQRFTHLTTHFFGVYDGHGGSQVANY 266


>GSVIVT01035420001 assembled CDS
          Length = 505

 Score =  197 bits (500), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 117/274 (42%), Positives = 159/274 (58%), Gaps = 21/274 (7%)

Query: 1   MSPAVAMTLSLGNSICDNSGIATHVEITRLKLVTDAVSLLSDPAKVVSDEAVAVCSGSSD 60
           MSPAVA+   LGNS+CDN  +A+H+++TR KL+TDA SLLSD A  VS E++A       
Sbjct: 4   MSPAVAVPFRLGNSVCDNPTVASHMDVTRFKLMTDATSLLSDSATQVSTESIAAAL---- 59

Query: 61  DAKNGMEFTTLSESKDGGVGGNDSVPTDAMIQXXXXXXXXXXXXXTNGTISXXXXXXXXG 120
                     +SE+K   V G+D V  ++                T+             
Sbjct: 60  -------LDMVSENKSNWVAGDDVVIRES---------EEDDFLSTSSICGEDLLAFEAN 103

Query: 121 SEINLPKSVEIEDMIEDSQIIAKAIIVESSNEVQVPTAKLLIAAVSPNADITDGSELRAS 180
            E   P S++IE    +  IIAK+  +   N  Q   +  L A  S   +I    EL++S
Sbjct: 104 FETGTPGSLDIEKDGCNDPIIAKSSHLGELNAEQEIVSDSL-AVTSLEEEIGFRPELKSS 162

Query: 181 AVVLKLPSESNLSKGTSRSVFEIDCVPLWGSVSICGRRPEMEDSLAAVPRFAKIPIKMLI 240
            VV++LP E  +S    RSVFE+  VPLWG  SICGRRPEMED++A VPRF +IPI+MLI
Sbjct: 163 EVVIQLPVEKGVSGTLVRSVFELVYVPLWGFTSICGRRPEMEDAVATVPRFFQIPIQMLI 222

Query: 241 GDHVVNGLNESLTHLTSHFFGVYDGHGGAQVHLY 274
           GD V++G+++ ++HLT+HFFGVYDGHGG+QV  Y
Sbjct: 223 GDRVIDGMSKCVSHLTAHFFGVYDGHGGSQVANY 256


>GSVIVT01015156001 assembled CDS
          Length = 368

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 69/92 (75%)

Query: 183 VLKLPSESNLSKGTSRSVFEIDCVPLWGSVSICGRRPEMEDSLAAVPRFAKIPIKMLIGD 242
           VL+L +E  +++  S SVFE +CVPLWG  SICGRR EMED++AAVP F KIPI+ L   
Sbjct: 28  VLELTNERRMNRTVSDSVFEFNCVPLWGFTSICGRRLEMEDAVAAVPNFLKIPIQTLTDG 87

Query: 243 HVVNGLNESLTHLTSHFFGVYDGHGGAQVHLY 274
            ++NG+N  L +LT+HFFGVYDGHGG QV  Y
Sbjct: 88  LLLNGMNPELDYLTAHFFGVYDGHGGCQVANY 119


>GSVIVT01015308001 assembled CDS
          Length = 330

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 209 WGSVSICGRRPEMEDSLAAVPRFAKIPIKMLIGDHVVNGLNESLTHLTSHFFGVYDGHGG 268
           WG  S+ GRR EMED++A VP F        IG         S      HFFGVYDGHGG
Sbjct: 37  WGFTSVIGRRREMEDAVAVVPGFMSRTCDH-IGGCTAPASRTSREISPVHFFGVYDGHGG 95

Query: 269 AQVHLY 274
           +QV  +
Sbjct: 96  SQVAKF 101


>GSVIVT01016988001 assembled CDS
          Length = 372

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 209 WGSVSICGRRPEMEDSLAAVPRFAKIPIKMLIGDHVVNGLNESLTHLTSHFFGVYDGHGG 268
           WG  S  G+R  MEDSLA VP F  +  K  +G         +      HFFG+YDGHGG
Sbjct: 77  WGRSSDVGKRSGMEDSLAIVPGFMSLSCKQ-VGGCTAPECTYAAEDSPVHFFGLYDGHGG 135

Query: 269 AQVHLY 274
            QV  Y
Sbjct: 136 PQVSCY 141


>GSVIVT01016995001 assembled CDS
          Length = 372

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 209 WGSVSICGRRPEMEDSLAAVPRFAKIPIKMLIGDHVVNGLNESLTHLTSHFFGVYDGHGG 268
           WG  S  G+R  MEDSLA VP F  +  K  +G         +      HFFG+YDGHGG
Sbjct: 77  WGRSSDVGKRSGMEDSLAIVPGFMSLSCKQ-VGGCTAPECTYAAEDSPVHFFGLYDGHGG 135

Query: 269 AQVHLY 274
            QV  Y
Sbjct: 136 PQVSCY 141