Jatropha Genome Database

JcCA0124371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0124371.10 - phase: 0 
         (95 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016559001 assembled CDS                                       118   5e-28
GSVIVT01024952001 assembled CDS                                       113   2e-26
GSVIVT01024086001 assembled CDS                                        92   4e-20

>GSVIVT01016559001 assembled CDS
          Length = 254

 Score =  118 bits (296), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/69 (81%), Positives = 61/69 (88%)

Query: 26  VHFELRKWLKENTSPEVAETTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIEI 85
           VH ELR W + N SPEVA T RIIYGGSV+ ANCKELAA+PDVDGFLVGGASLKPEFI+I
Sbjct: 185 VHSELRNWFQANASPEVAATIRIIYGGSVSGANCKELAAKPDVDGFLVGGASLKPEFIDI 244

Query: 86  IKSAEVKKS 94
           IKSAEVKK+
Sbjct: 245 IKSAEVKKN 253


>GSVIVT01024952001 assembled CDS
          Length = 254

 Score =  113 bits (282), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 58/70 (82%)

Query: 26  VHFELRKWLKENTSPEVAETTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIEI 85
           VH ELRKWL +N   EVA +TRIIYGGSV  ANCKEL  Q DVDGFLVGGASLKPEFI+I
Sbjct: 185 VHCELRKWLHDNAGDEVAASTRIIYGGSVNGANCKELTTQLDVDGFLVGGASLKPEFIDI 244

Query: 86  IKSAEVKKSA 95
           IKSA VKKSA
Sbjct: 245 IKSATVKKSA 254


>GSVIVT01024086001 assembled CDS
          Length = 256

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 26  VHFELRKWLKENTSPEVAETTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLK-PEFIE 84
           VH  +R WLK+N S EVA  TRIIYGGSV  +NC ELA Q D+DGFLVGGASLK PEF  
Sbjct: 185 VHIAVRDWLKKNVSAEVASKTRIIYGGSVNGSNCSELAKQEDIDGFLVGGASLKGPEFAV 244

Query: 85  IIKSAEVKKSA 95
           I+ S   KK A
Sbjct: 245 IVNSVTSKKVA 255