Jatropha Genome Database

JcCA0123391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0123391.10 + phase: 0 /pseudo/partial
         (113 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026838001 assembled CDS                                       180   2e-46

>GSVIVT01026838001 assembled CDS
          Length = 249

 Score =  180 bits (456), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/120 (75%), Positives = 98/120 (81%), Gaps = 9/120 (7%)

Query: 1   MINVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFSHLNLTFSIGGQISFDT--- 57
           M+NVSPIGRNCSQEERDEFEKYDK+HNIRPKMVSVLREKF+HLNLTFSIGGQISFD    
Sbjct: 127 MLNVSPIGRNCSQEERDEFEKYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQ 186

Query: 58  A*DTSMSLM------KSTSFGDKTYKGGNDYEIYESDRTVGHTVTSPDDTVVQCKALFLA 111
             D +  L       +   FGDKTY+ GND+EIYES+RTVGHTVTSPDDTV QC ALFLA
Sbjct: 187 GWDKTYCLRYLDDFPEIHFFGDKTYEAGNDHEIYESERTVGHTVTSPDDTVEQCTALFLA 246