Jatropha Genome Database

JcCA0122941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122941.10 - phase: 0 
         (251 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021249001 assembled CDS                                       352   9e-98

>GSVIVT01021249001 assembled CDS
          Length = 355

 Score =  352 bits (903), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 173/247 (70%), Positives = 201/247 (81%), Gaps = 16/247 (6%)

Query: 7   VKIIDIHQHCLYKTLRGGHTSICSSVQFIPWRPWEVITGGLDSKLVMWDFSRGRPLKIVD 66
           VKIIDI Q CL+KTLR GHTSICSSV+F+PWRPWEVITGGLDSKLVMWDFS+GRP KIVD
Sbjct: 123 VKIIDIRQKCLFKTLRSGHTSICSSVKFLPWRPWEVITGGLDSKLVMWDFSKGRPYKIVD 182

Query: 67  FGLPDMKSSNTA-QCFNPAFVHAIAVPDADMLDNSGHICIAGRGDGVLNVIDIESELAAI 125
           FG+PDM++S++A QC NPAFVHAIAVP+ DML+ SG IC+  RGDGV++VI+IESELAA 
Sbjct: 183 FGMPDMENSSSAGQCLNPAFVHAIAVPEVDMLEKSGKICVVARGDGVVDVINIESELAAA 242

Query: 126 RSKSTSKARKGSQSISKEYIATAGTDGSR-LHLDYSLGGHVAAVSCVAFSLFRERGKFII 184
              + ++              T   +G R LHLDYSLGGH A+VSCVAF+LF ERGK II
Sbjct: 243 HVSTVAE--------------TLNQNGRRRLHLDYSLGGHTASVSCVAFALFGERGKSII 288

Query: 185 SGGNDKSVKVWDCFRYLGTGQSGCNNDILRLNIDLSKKVNWLCTTPTESENLVVCDTTKV 244
           SGGNDK+VKVWDC RYL  GQ   +ND+L LNI+LSKKVNWLCTTP +SENLVVCDTTKV
Sbjct: 289 SGGNDKTVKVWDCSRYLDAGQPSSSNDVLHLNINLSKKVNWLCTTPADSENLVVCDTTKV 348

Query: 245 VKVYSVS 251
           VKV++VS
Sbjct: 349 VKVHTVS 355