Jatropha Genome Database

JcCA0122251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122251.10 - phase: 0 /partial
         (179 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034552001 assembled CDS                                       244   2e-65
GSVIVT01022285001 assembled CDS                                       216   4e-57
GSVIVT01013471001 assembled CDS                                       159   8e-40
GSVIVT01023643001 assembled CDS                                       152   6e-38
GSVIVT01023837001 assembled CDS                                       145   7e-36
GSVIVT01035830001 assembled CDS                                       142   8e-35
GSVIVT01032096001 assembled CDS                                       129   6e-31
GSVIVT01028402001 assembled CDS                                       124   2e-29
GSVIVT01033297001 assembled CDS                                       120   3e-28
GSVIVT01021248001 assembled CDS                                        66   1e-11
GSVIVT01013057001 assembled CDS                                        47   4e-06

>GSVIVT01034552001 assembled CDS
          Length = 1067

 Score =  244 bits (622), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 119/179 (66%), Positives = 131/179 (73%), Gaps = 2/179 (1%)

Query: 1   MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
           M+T GRLVAGSHNRNEFVLINADE GR+ SV+ELSGQ+CQICGDEIEITVDGEPFVACNE
Sbjct: 1   MDTKGRLVAGSHNRNEFVLINADEIGRVTSVKELSGQICQICGDEIEITVDGEPFVACNE 60

Query: 61  CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVXXXXXXXXXXXXXXXXXYGNFDG 120
           CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRV                 + +   
Sbjct: 61  CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDFRSNYS 120

Query: 121 MGPEQVAEAMLSARLNTGRASYSNAAGIPTXXXXXXXXXXXKIPLLTYGEEDAEISSDR 179
             P QVAEAMLSA LN G  S+++ +GI T            IPLLTYG+ D  ISSD+
Sbjct: 121 RDPHQVAEAMLSAHLNIG--SHAHTSGISTPLDLDSSSVPSGIPLLTYGQYDVGISSDK 177


>GSVIVT01022285001 assembled CDS
          Length = 1097

 Score =  216 bits (551), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 101/179 (56%), Positives = 125/179 (69%)

Query: 1   MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
           M TGGRLVAGSH+RNEFVLINAD+  RIKSV+ELSGQ+C ICGD +EITVDGE FVACNE
Sbjct: 1   MATGGRLVAGSHHRNEFVLINADDIARIKSVRELSGQICHICGDGVEITVDGELFVACNE 60

Query: 61  CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVXXXXXXXXXXXXXXXXXYGNFDG 120
           CAFPVCRPCYEYERREGN+ CPQCKTRYKR+KG+PRV                 Y N + 
Sbjct: 61  CAFPVCRPCYEYERREGNKVCPQCKTRYKRMKGNPRVEGDEEEDDIDDLEHEFDYANSNT 120

Query: 121 MGPEQVAEAMLSARLNTGRASYSNAAGIPTXXXXXXXXXXXKIPLLTYGEEDAEISSDR 179
              ++VA  ML+  L+    ++ +A+GI T           ++PLL+Y  E+A+I +D+
Sbjct: 121 WATQEVAGEMLTVCLDIDCGNHDSASGISTCSELVSPPLSSQVPLLSYPMENADIHADQ 179


>GSVIVT01013471001 assembled CDS
          Length = 969

 Score =  159 bits (401), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 84/174 (48%), Positives = 102/174 (58%), Gaps = 15/174 (8%)

Query: 1   MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
           M     LVAGSHNRNE V+I  D     K +Q+LSGQ+CQICGD++ + VDGE FVACNE
Sbjct: 1   MEASAGLVAGSHNRNELVVIRRDGESGPKPLQQLSGQICQICGDDVGLNVDGELFVACNE 60

Query: 61  CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVXXXXXXXXXXXXXXXXXYGNFDG 120
           CAFPVCR CYEYERREG+Q CPQCKTR+KR+KG  RV                   NF+G
Sbjct: 61  CAFPVCRTCYEYERREGSQVCPQCKTRFKRLKGCARVEGDEEEDDIDDVDNEF---NFEG 117

Query: 121 MGPEQ----VAEAMLSARLNTGRASYSNAAGIPTXXXXXXXXXXXKIPLLTYGE 170
            G       +AEAML   +  GRA  S+   +             ++PLLT G+
Sbjct: 118 RGKVDMQGALAEAMLQGHMTYGRAYDSDLPHV--------FHTMPQVPLLTNGQ 163


>GSVIVT01023643001 assembled CDS
          Length = 1037

 Score =  152 bits (385), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 76/142 (53%), Positives = 91/142 (64%), Gaps = 7/142 (4%)

Query: 1   MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
           M     LVAGSHNRNE V+I+  E    K ++ L+GQVC+ICGDEI +TVDGE FVACNE
Sbjct: 1   MEASAGLVAGSHNRNELVVIHGHEEP--KPLRSLNGQVCEICGDEIGLTVDGEVFVACNE 58

Query: 61  CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVXXXXXXXXXXXXXXXXXYGNFDG 120
           C FPVCRPCYEYERREG+Q CPQCKTR+KR+KG  RV                   N D 
Sbjct: 59  CGFPVCRPCYEYERREGSQLCPQCKTRFKRLKGCARVEGDDDEEDIDDIEHEF---NIDD 115

Query: 121 MGPEQ--VAEAMLSARLNTGRA 140
              +   +AEAML  +++ GR 
Sbjct: 116 EQNKNKLIAEAMLHGKMSYGRG 137


>GSVIVT01023837001 assembled CDS
          Length = 935

 Score =  145 bits (367), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 98/174 (56%), Gaps = 12/174 (6%)

Query: 1   MNTGGRLVAGSHNRNEFVLI--NADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVAC 58
           M     LVAGSHNRNE V+I    + +GR K +  LSGQ CQICGD++ +T +GE FVAC
Sbjct: 1   MEASAGLVAGSHNRNELVVIRREGEAAGR-KPLANLSGQTCQICGDDVGLTAEGELFVAC 59

Query: 59  NECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVXXXXXXXXXXXXXXXXXY--G 116
           NECAFP+CR CYEYER EGNQ CPQCKTR+KR+KG  RV                 +   
Sbjct: 60  NECAFPICRTCYEYERSEGNQVCPQCKTRFKRLKGCARVEGDEEEDDVDDLENEFNFVGR 119

Query: 117 NFDGMGPEQVAEAMLSARLNTGRASYSNAAGIPTXXXXXXXXXXXKIPLLTYGE 170
             D    + +AE ML   +  GRA   +A  +P             +PLLT G+
Sbjct: 120 RRDTQDMQYIAEGMLQGHMTYGRA--GDADMLPQVVNTMPT-----VPLLTNGQ 166


>GSVIVT01035830001 assembled CDS
          Length = 921

 Score =  142 bits (358), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 74/97 (76%)

Query: 1  MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
          M     +VAGSH RNE V I  D     K ++ L+GQ+CQICGD + +T  G+ FVACNE
Sbjct: 1  MEANAGMVAGSHKRNELVRIRHDSDSGPKPLKHLNGQICQICGDTVGLTAAGDVFVACNE 60

Query: 61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRV 97
          CAFPVCRPCYEYER++GNQ+CPQCKTRYKR KGSPRV
Sbjct: 61 CAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRV 97


>GSVIVT01032096001 assembled CDS
          Length = 929

 Score =  129 bits (325), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 88/149 (59%), Gaps = 11/149 (7%)

Query: 24  ESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQ 83
           ESG  KS++ L GQVCQICGD +  TVDGEPF+AC+ CAFPVCRPCYEYER++GNQ+CPQ
Sbjct: 6   ESGA-KSLKGLGGQVCQICGDNVGKTVDGEPFIACDVCAFPVCRPCYEYERKDGNQSCPQ 64

Query: 84  CKTRYKRIKGSPRV-XXXXXXXXXXXXXXXXXYGNFDGMGPEQVAEAMLSARLNTGRASY 142
           CKTRYKR KGSP +                  Y + D    +++AE MLS ++  GR   
Sbjct: 65  CKTRYKRHKGSPAIRGDGEEDGDVDDVVADINYSSEDQNQKQKIAERMLSWQMTYGRGED 124

Query: 143 SNAAGIPTXXXXXXXXXXXKIPLLTYGEE 171
           +N                  IPLLT G +
Sbjct: 125 TN---------YDREVSHNHIPLLTNGMD 144


>GSVIVT01028402001 assembled CDS
          Length = 1000

 Score =  124 bits (312), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 68/91 (74%), Gaps = 3/91 (3%)

Query: 7  LVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNECAFPVC 66
          LVAGSH RNE  +++ ++  R  + Q +  ++C++CGDEI +  DGE FVAC+EC FPVC
Sbjct: 4  LVAGSHTRNEMHVLHGEQ--RPPTRQSVP-KLCRVCGDEIGVKADGELFVACHECGFPVC 60

Query: 67 RPCYEYERREGNQACPQCKTRYKRIKGSPRV 97
          +PCYEYER EGNQ CPQC TRYKR KG  RV
Sbjct: 61 KPCYEYERSEGNQCCPQCNTRYKRHKGCARV 91


>GSVIVT01033297001 assembled CDS
          Length = 1243

 Score =  120 bits (302), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/69 (68%), Positives = 56/69 (81%)

Query: 29  KSVQELSGQVCQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88
           K  +    QVCQIC D +  TVDGEPF+AC+ CAFPVCRPCYEYER++GNQ+CPQCKT+Y
Sbjct: 165 KPSKHTGDQVCQICNDNVGTTVDGEPFIACSVCAFPVCRPCYEYERKDGNQSCPQCKTKY 224

Query: 89  KRIKGSPRV 97
           KR KGSP +
Sbjct: 225 KRHKGSPPI 233


>GSVIVT01021248001 assembled CDS
          Length = 983

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 33/50 (66%)

Query: 39 CQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88
          C  CG+ +    +GE FVAC+EC FPVC+ C +YE +EG + C +C T Y
Sbjct: 9  CTTCGEPVGFDSNGEVFVACHECNFPVCKSCLDYEIKEGRKVCLRCSTPY 58


>GSVIVT01013057001 assembled CDS
          Length = 927

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 36  GQVCQICGDEIEITVD--GEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89
           G  C I G + +I  D  GE  + C EC F +CR CY    R G+  CP CK  YK
Sbjct: 76  GSTCAIPGCDAKIMTDERGEDILPC-ECDFKICRDCYVDAVRTGDGICPGCKEPYK 130