Jatropha Genome Database

JcCA0122211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122211.10 - phase: 0 
         (318 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033233001 assembled CDS                                       545   e-156
GSVIVT01001463001 assembled CDS                                       526   e-150

>GSVIVT01033233001 assembled CDS
          Length = 463

 Score =  545 bits (1405), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 267/314 (85%), Positives = 281/314 (89%), Gaps = 3/314 (0%)

Query: 1   MVGSIE--AMNVHQNGWSIQHGNCLEEKLDEFRCLLGKADGDPLRIVGVGAGAWGSVFAA 58
           MVGSI+  + N+H NG S+Q+   +EEKLDE R LLGKA+GD L+IVGVGAGAWGSVFAA
Sbjct: 1   MVGSIKVKSQNLHSNG-SVQNCASMEEKLDELRHLLGKAEGDILKIVGVGAGAWGSVFAA 59

Query: 59  LLQDSYGQFREKVQIRIWRRPGRAVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 118
           LLQD+YGQFREKVQIRIWRRPGR VD+ATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR
Sbjct: 60  LLQDNYGQFREKVQIRIWRRPGRTVDKATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 119

Query: 119 LGDRTLFADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVVNGVPSTETCEVFEEI 178
           LGDRTL ADEILKDGFCLNMI TPLCPLKVVTNLQEAVWDADIVVNG+PSTET EVFEEI
Sbjct: 120 LGDRTLLADEILKDGFCLNMIHTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREVFEEI 179

Query: 179 GHYWKERITVPIIISLAKGIEAALEPVPHIITPTQMINRATGINMENILYLGGPNIASEI 238
            HYWKERITVPIIISL+KGIEAALEP+PHIITPTQMINRATG+ MENILYLGGPNIASEI
Sbjct: 180 NHYWKERITVPIIISLSKGIEAALEPLPHIITPTQMINRATGVAMENILYLGGPNIASEI 239

Query: 239 YNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGKFFYF 298
           YNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAG     
Sbjct: 240 YNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAAL 299

Query: 299 LAHIDYCSMAYFQH 312
                     YF H
Sbjct: 300 TNESATSKSVYFAH 313


>GSVIVT01001463001 assembled CDS
          Length = 465

 Score =  526 bits (1355), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 257/315 (81%), Positives = 274/315 (86%), Gaps = 4/315 (1%)

Query: 1   MVGSIEAM--NVHQNGWSIQHGNCL-EEKLDEFRCLLGKADGDPLRIVGVGAGAWGSVFA 57
           MVG+ E M  +V+ NG S+Q+ N + EEKLDE R L+GKA+GDP+RIVGVGAGAWGSVFA
Sbjct: 1   MVGTTEGMANSVYLNG-SVQNSNGVQEEKLDELRRLIGKAEGDPMRIVGVGAGAWGSVFA 59

Query: 58  ALLQDSYGQFREKVQIRIWRRPGRAVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 117
           A+LQDSYG  R+KVQIRIWRRPGR VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA
Sbjct: 60  AMLQDSYGHLRDKVQIRIWRRPGRFVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119

Query: 118 RLGDRTLFADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVVNGVPSTETCEVFEE 177
           RLGDR L ADEILKDGFCLNMIDTPLCP+KVVTNLQEAVWDADIV+NG+PSTET EVFEE
Sbjct: 120 RLGDRVLHADEILKDGFCLNMIDTPLCPMKVVTNLQEAVWDADIVINGLPSTETREVFEE 179

Query: 178 IGHYWKERITVPIIISLAKGIEAALEPVPHIITPTQMINRATGINMENILYLGGPNIASE 237
           I  YWKERITVP+IISLAKGIEA LEP P IITPTQMINRATG+ MENILYLGGPNIASE
Sbjct: 180 ISKYWKERITVPVIISLAKGIEAELEPEPRIITPTQMINRATGVPMENILYLGGPNIASE 239

Query: 238 IYNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGKFFY 297
           IYNKEYANARICGAEKWRKPLAKFLRQPHFIVWDN DL+THEVMGGLKN YAIGAG    
Sbjct: 240 IYNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNGDLITHEVMGGLKNAYAIGAGMVAA 299

Query: 298 FLAHIDYCSMAYFQH 312
                      YF H
Sbjct: 300 LTNESATSKSVYFAH 314