Jatropha Genome Database

JcCA0122171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122171.10 - phase: 0 /partial
         (107 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033427001 assembled CDS                                       171   5e-44

>GSVIVT01033427001 assembled CDS
          Length = 168

 Score =  171 bits (434), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/107 (79%), Positives = 88/107 (82%)

Query: 1   MATATXXXXXXXXRLYKDYLQNPKSAXXXXXXIEGTYVCFGANYTTEYVLPSLEEQGVRQ 60
           MATAT        RLYKDY+QNPKSA      IEGTY  FGA YTT+ VLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYIQNPKSAPEPPPPIEGTYALFGATYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARRVEDIS 107
           LYPKG NVDFKKELRSLNRELQLH+LELADVLVERPSQYARRVEDIS
Sbjct: 61  LYPKGSNVDFKKELRSLNRELQLHLLELADVLVERPSQYARRVEDIS 107