Jatropha Genome Database

JcCA0122021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122021.20 + phase: 0 /partial
         (96 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019325001 assembled CDS                                        67   2e-12
GSVIVT01036871001 assembled CDS                                        51   9e-08
GSVIVT01003552001 assembled CDS                                        50   2e-07
GSVIVT01037751001 assembled CDS                                        45   5e-06
GSVIVT01037881001 assembled CDS                                        45   7e-06

>GSVIVT01019325001 assembled CDS
          Length = 128

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 35/45 (77%)

Query: 49 PLQPAGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
          P +  GI K  PVSPALR FLGVPE+SR +AVKKIW HIK NNLQ
Sbjct: 43 PPRSGGITKPVPVSPALRKFLGVPEASRAEAVKKIWEHIKLNNLQ 87


>GSVIVT01036871001 assembled CDS
          Length = 115

 Score = 51.2 bits (121), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 51 QPAGILKVTPVSPALRDFLG-VPESSRTDAVKKIWIHIKQNNLQ 93
          Q  GI K  PVSP L  FLG VP++SR+ A+KK+W HIK +NLQ
Sbjct: 31 QGGGITKPVPVSPQLGKFLGGVPQASRSLAIKKVWEHIKLHNLQ 74


>GSVIVT01003552001 assembled CDS
          Length = 303

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 53  AGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
            G  K+  +SP L+ F+GVPE +RT+ VK++W+HI++ +LQ
Sbjct: 131 GGFCKLCSLSPELQKFIGVPELARTEVVKQLWVHIREKDLQ 171



 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)

Query: 53  AGILKVTPVSPALRDFLGVPES--SRTDAVKKIWIHIKQNNLQV 94
           +G L   P+S AL  FL + ES  SR + VKKIW +IKQNNLQV
Sbjct: 249 SGFLAPLPLSDALVKFLNIEESALSRAEVVKKIWEYIKQNNLQV 292


>GSVIVT01037751001 assembled CDS
          Length = 331

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 29/42 (69%)

Query: 52  PAGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
           P G+ KV  VSP L+  +G P   RT+ VK++W +I++NNLQ
Sbjct: 144 PGGLNKVCGVSPELQTIVGQPALPRTEIVKQLWAYIRRNNLQ 185


>GSVIVT01037881001 assembled CDS
          Length = 68

 Score = 45.1 bits (105), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 19/29 (65%), Positives = 25/29 (86%)

Query: 65 LRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
          ++DFLGVPE  RT A+K+IW +IKQ+NLQ
Sbjct: 1  MQDFLGVPEIPRTQALKQIWAYIKQHNLQ 29