Jatropha Genome Database

JcCA0122021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122021.10 - phase: 0 
         (110 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019326001 assembled CDS                                       117   1e-27

>GSVIVT01019326001 assembled CDS
          Length = 575

 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 70/97 (72%), Gaps = 11/97 (11%)

Query: 1  MSCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSP---STSTA 57
          MSCLLPQFKC PDTFS H + H L        +K+RE + FR QC LSTTSP   +++TA
Sbjct: 1  MSCLLPQFKCPPDTFSTHPKLHIL--------SKNREAIYFRVQCALSTTSPPLSTSTTA 52

Query: 58 VLDLEKLRLPSFEAHPDSLVANSPWTYVGSIGPPKEV 94
          VLD+EKLRLPS E+H +S+ A+ PWTY+G +GPP E 
Sbjct: 53 VLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEA 89