Jatropha Genome Database

JcCA0120961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0120961.10 - phase: 0 /TE/partial
         (607 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017026001 assembled CDS                                        82   9e-16
GSVIVT01022096001 assembled CDS                                        51   2e-06

>GSVIVT01017026001 assembled CDS
          Length = 1273

 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 88/176 (50%), Gaps = 9/176 (5%)

Query: 142  NYRLAF---QESSSH-LQLICSDVWGPSPIISIDGXKYCLVLXPLFEILLGLFFTNQIXG 197
            N+RL +   +  SSH L LI  D+ GPSPI S  G  Y ++    +     L+       
Sbjct: 1047 NHRLPYSRNEHRSSHVLDLIHCDLPGPSPIKSNSGFLYYVIFIDDYSRFTWLYPLKFKSD 1106

Query: 198  LTFFFVRFQQLVKNSFDIKITSFQANXSGEFR--ALTTYLRDNGITQRISCPYILEXNGC 255
                F++F++ V+N    +I  FQ++   EF       +LR +GI  ++SCPY    NG 
Sbjct: 1107 FFDIFLQFKKFVENQHFARIKVFQSDGGAEFTNTCFKAHLRTSGIHHQLSCPYTPAQNGR 1166

Query: 256  VECEHRHIVK--LEELFHHSFFPHKFWTYAFIIAIYTINRLPFSTTNPYTLFELLF 309
             E +HRH+ +  L  LFH    P +FW  AF  A Y INRLP       + FELL+
Sbjct: 1167 AERKHRHVTETGLTLLFHSHLSP-RFWVDAFSTATYIINRLPTPLLGGKSPFELLY 1221


>GSVIVT01022096001 assembled CDS
          Length = 390

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 11/141 (7%)

Query: 150 SSSHLQLICSDVWGPSPIISIDGXKYCLVLXPLFEILLGLFFTNQIXGLTFFFVRFQQLV 209
           S+S LQL+ SDVW  SP+ S +  KY ++    F   +  +    +  +   F+ F+ LV
Sbjct: 160 STSSLQLLYSDVW-CSPVESFNDNKYYVIFIDHFTKYIWFYLNYDVLDI---FIHFKLLV 215

Query: 210 KNSFDIKITSFQANXSGEFRALTTYLRDNGITQRISCPYILEXNGCVECEHRHIVKLEEL 269
           +  F+ +I     N   E  AL  +L  +G++   +  +  E NG  EC HR +++L   
Sbjct: 216 EKKFNKQIIHLYTNNCEECLALNFFLAHHGVSHFTTHSHTPEHNGYSECRHRELLELG-- 273

Query: 270 FHHSFFPHKFWTYAFIIAIYT 290
                  H  W    +I+I T
Sbjct: 274 -----LGHTAWQMNKMISIIT 289