Jatropha Genome Database

JcCA0120941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0120941.10 - phase: 0 
         (257 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034004001 assembled CDS                                       313   4e-86

>GSVIVT01034004001 assembled CDS
          Length = 1454

 Score =  313 bits (803), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 164/245 (66%), Positives = 195/245 (79%), Gaps = 1/245 (0%)

Query: 1    MMALKAINTSFSPTKHTLFRTRRPINQKNSILYLCXXXXXXXXXXXXXXXXGDTRKQELL 60
            M+ALKA  TSF+ TK+ LF TRR + +K S L LC                GD+RKQELL
Sbjct: 1197 MIALKATQTSFTSTKYVLFHTRR-LPKKRSTLSLCKSNDDDSSPSDGSLPEGDSRKQELL 1255

Query: 61   ARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEAGTRIMENIESQ 120
            ARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFD+IGE+ALK L+EAGTRIMEN+ESQ
Sbjct: 1256 ARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDQIGENALKELEEAGTRIMENMESQ 1315

Query: 121  MQAFEESAELNKQEIEKNENKIADFEGQIVKDRNEGMFFKNLGQKPPVDKAKAKVEAERI 180
            MQAF+ES+E+++ EIE NE K+ADFEGQI K+RNEG+FFKNL Q+   +KA+AK E E+I
Sbjct: 1316 MQAFQESSEMSRLEIENNEKKLADFEGQIEKERNEGLFFKNLRQRTTKEKAEAKEEMEKI 1375

Query: 181  KELIKTKAGSKARKNIYLALIGVLVIVIADSFISSSPDWRKVAVLGAILVGLITQLSYEQ 240
            +EL K  AGSK R+NIYLAL+ VLVI I D+ IS S DWRKVAVLGAILV L++Q  YEQ
Sbjct: 1376 RELTKENAGSKIRRNIYLALVAVLVIGIIDNLISPSSDWRKVAVLGAILVALLSQFIYEQ 1435

Query: 241  RLSSE 245
            R+++E
Sbjct: 1436 RMTTE 1440