Jatropha Genome Database

JcCA0117501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0117501.10 - phase: 0 
         (100 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021666001 assembled CDS                                       179   3e-46
GSVIVT01020436001 assembled CDS                                        68   7e-13

>GSVIVT01021666001 assembled CDS
          Length = 394

 Score =  179 bits (453), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/86 (97%), Positives = 86/86 (100%)

Query: 1  MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIE 60
          MPPK+SKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL+IPAENFPFCTIE
Sbjct: 1  MPPKSSKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60

Query: 61 PNEARVNIPDERFEWLCQLYKPKSEV 86
          PNEARVNIPDERFEWLCQLYKPKSEV
Sbjct: 61 PNEARVNIPDERFEWLCQLYKPKSEV 86


>GSVIVT01020436001 assembled CDS
          Length = 370

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/71 (52%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 25 LKIGIVGLPNVGKSTLFNTLTKL-SIPAENFPFCTIEPNEARVNIPDERFEWLCQLYKPK 83
          LK GIVGLPNVGKSTLFN + +     A NFPFCTIEPN   V +PD R   L  + K +
Sbjct: 3  LKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSDISKSQ 62

Query: 84 SEVCDSTVLFV 94
            V  +++ FV
Sbjct: 63 -RVVPASIEFV 72