Jatropha Genome Database

JcCA0117111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0117111.10 - phase: 0 /pseudo
         (114 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003829001 assembled CDS                                       102   5e-23
GSVIVT01013358001 assembled CDS                                        97   1e-21
GSVIVT01033214001 assembled CDS                                        73   3e-14
GSVIVT01033207001 assembled CDS                                        72   4e-14
GSVIVT01035030001 assembled CDS                                        71   8e-14
GSVIVT01035031001 assembled CDS                                        67   1e-12
GSVIVT01035272001 assembled CDS                                        66   3e-12

>GSVIVT01003829001 assembled CDS
          Length = 586

 Score =  102 bits (253), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 55/67 (82%)

Query: 2   EGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLGI 61
           EGL+ C VN VPLSPI+FLER+A  Y DR SV+YGS++Y+WSET  RCL LAS LTQLGI
Sbjct: 46  EGLVRCPVNDVPLSPITFLERSATAYRDRTSVVYGSVKYTWSETQERCLKLASALTQLGI 105

Query: 62  SNGDVVS 68
           S GDVV+
Sbjct: 106 SRGDVVA 112


>GSVIVT01013358001 assembled CDS
          Length = 411

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 55/70 (78%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          MEG+I CS N+VPLSPISFLER+A +Y DR +++YG ++++W +T  RC  LAS +T LG
Sbjct: 10 MEGMIRCSANHVPLSPISFLERSASVYRDRVAIVYGRVKFTWRDTLERCTRLASAITHLG 69

Query: 61 ISNGDVVSSF 70
          IS GDVV++ 
Sbjct: 70 ISRGDVVAAL 79


>GSVIVT01033214001 assembled CDS
          Length = 509

 Score = 72.8 bits (177), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 46/68 (67%)

Query: 1   MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
           ME L     N  PL+ +SFL+RAA +YGD  SV+Y S  Y+WS+T++RCL +AS +  LG
Sbjct: 40  MEELKPRPANSSPLTTLSFLDRAATVYGDCPSVVYNSTTYTWSQTHHRCLQVASSIKSLG 99

Query: 61  ISNGDVVS 68
           I  G VVS
Sbjct: 100 IGRGQVVS 107


>GSVIVT01033207001 assembled CDS
          Length = 449

 Score = 72.4 bits (176), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 45/68 (66%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          M+ L     N  PL+P+ FL+RAA +YGD  SV+Y S+ Y+WS+T+ RCL +AS +   G
Sbjct: 1  MDSLKPRPANSSPLTPLGFLDRAATVYGDCPSVLYNSITYTWSQTHRRCLQVASSIKSFG 60

Query: 61 ISNGDVVS 68
          I  G VVS
Sbjct: 61 IGRGHVVS 68


>GSVIVT01035030001 assembled CDS
          Length = 513

 Score = 71.2 bits (173), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 44/61 (72%)

Query: 8  SVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLGISNGDVV 67
          + NY  L+P+ FLERAA ++ +RKSVI+GSL+Y+W +TY RC  LAS L++  I  G  V
Sbjct: 14 AANYTALTPLWFLERAAVVHPNRKSVIHGSLQYTWLQTYQRCRRLASALSKYSIGAGSTV 73

Query: 68 S 68
          +
Sbjct: 74 A 74


>GSVIVT01035031001 assembled CDS
          Length = 335

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 46/68 (67%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          ++ L   + NY  L+P+  LERAA ++ +RKSVI+GSL+Y+W +TY RC  LAS L++  
Sbjct: 7  IDDLPKNAANYTALTPLWLLERAAVVHPNRKSVIHGSLQYTWLQTYQRCRRLASALSKYS 66

Query: 61 ISNGDVVS 68
          I  G  V+
Sbjct: 67 IGAGSTVA 74


>GSVIVT01035272001 assembled CDS
          Length = 444

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 43/68 (63%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          M+ L   + NY  L+PI+FL RAA  Y  + S+IY S  ++W +TY RC  LAS L +L 
Sbjct: 1  MDRLPKSAANYTALTPINFLTRAAVAYARKTSLIYESTRFTWQQTYERCCRLASSLHRLN 60

Query: 61 ISNGDVVS 68
          ++  DVVS
Sbjct: 61 VAKNDVVS 68