Jatropha Genome Database

JcCA0116921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0116921.10 - phase: 0 /partial
         (195 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028056001 assembled CDS                                       301   1e-82
GSVIVT01031185001 assembled CDS                                       277   2e-75

>GSVIVT01028056001 assembled CDS
          Length = 494

 Score =  301 bits (770), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 153/168 (91%), Positives = 162/168 (96%)

Query: 1   AAHDAFVESSGALNTIATSLMKVANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPT 60
           AAHDAFVE+SG++NT+ATSLMK+ANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPT
Sbjct: 299 AAHDAFVETSGSVNTVATSLMKIANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPT 358

Query: 61  QCEALTMVCAQGMGNHVAITVGGSNGHFELNVFKPMIASNLLHSVRLLGDASASFEKNCV 120
           QCEALTMVCAQ MGNHVAITVGGSNGHFELNVFKP+IAS LL S+RLLGDASASFEKNCV
Sbjct: 359 QCEALTMVCAQVMGNHVAITVGGSNGHFELNVFKPLIASGLLRSIRLLGDASASFEKNCV 418

Query: 121 RGIQANRERISKLLHESLMLVTALNPKIGYDNAAAVAKLAHKEGSTLK 168
           RGIQAN+ERI KLLHESLMLVT+LNPKIGYDNAAAVAK AHKEG TLK
Sbjct: 419 RGIQANKERILKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGRTLK 466


>GSVIVT01031185001 assembled CDS
          Length = 496

 Score =  277 bits (709), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 150/168 (89%), Positives = 160/168 (95%)

Query: 1   AAHDAFVESSGALNTIATSLMKVANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPT 60
           AAHDAFVE+SGALNTI  SLMK+ NDIRLLGSGPRCGLGEL LP+NEPGSSIMPGKVNPT
Sbjct: 301 AAHDAFVETSGALNTICASLMKIGNDIRLLGSGPRCGLGELTLPDNEPGSSIMPGKVNPT 360

Query: 61  QCEALTMVCAQGMGNHVAITVGGSNGHFELNVFKPMIASNLLHSVRLLGDASASFEKNCV 120
           QCEALTMVCAQ MGNHVAITVGGSNGHFELNV+KP+IAS LL S+RLLGDASASFEKNC+
Sbjct: 361 QCEALTMVCAQVMGNHVAITVGGSNGHFELNVYKPLIASGLLRSLRLLGDASASFEKNCI 420

Query: 121 RGIQANRERISKLLHESLMLVTALNPKIGYDNAAAVAKLAHKEGSTLK 168
           RGIQAN+ERISKLLHESLMLVT+LNPKIGYDNAAAVAK AHKEG+TLK
Sbjct: 421 RGIQANQERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLK 468