Jatropha Genome Database

JcCA0116741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0116741.10 + phase: 0 
         (294 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017760001 assembled CDS                                       234   3e-62
GSVIVT01027978001 assembled CDS                                       194   3e-50
GSVIVT01007963001 assembled CDS                                       143   8e-35

>GSVIVT01017760001 assembled CDS
          Length = 427

 Score =  234 bits (598), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 143/202 (70%), Gaps = 5/202 (2%)

Query: 92  DPELRYSIESKVKDWDEKRKEWLKHHPSF---AAGARDRVVMVTGSQSSPCKNPIGDHFL 148
           DP   YS+  K+ DWDE+R EWL+ +P+F       + RV++VTGS   PC+NP+GDH+L
Sbjct: 65  DPNKPYSLGPKISDWDEQRAEWLRKNPNFPNFIGPNKPRVLLVTGSSPKPCENPVGDHYL 124

Query: 149 LRFFKNKVDYCRIHGYDIFYNNLLLHPKMTSFWAKLPVVRAAMLAHPEAEWIWWVDSDAM 208
           L+  KNK+DYCR+HG +IFYN  LL  +M  FWAKLP++R  +L+HPE E++WW+DSDAM
Sbjct: 125 LKAIKNKIDYCRLHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEIEFLWWMDSDAM 184

Query: 209 FTDMEFKLPLRRYDYKNHNLVVHGWAKLIYGAKSWTALNAGVFLIRNCQWSMDFIDTWAS 268
           FTDM F++P  R  YK+HN V+HGW +++Y  K+W  LN G FL+RNCQW++D +D WA 
Sbjct: 185 FTDMAFEVPWER--YKDHNFVMHGWNEMVYDQKNWIGLNTGSFLLRNCQWALDILDAWAP 242

Query: 269 MGPMSPDVEKWGQIQRSLFKDK 290
           MGP      + G+I     KD+
Sbjct: 243 MGPKGKIRTEAGKILTRELKDR 264


>GSVIVT01027978001 assembled CDS
          Length = 382

 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 88/173 (50%), Positives = 122/173 (70%), Gaps = 5/173 (2%)

Query: 80  LRYDPPDRTFYDDPELRYSIESKVKDWDEKRKEWLKHHPSF---AAGARDRVVMVTGSQS 136
           L  D  D +   DP+  YS+  K+ DWDE+R  WL+ +P+F       + RV++VTGS  
Sbjct: 87  LLVDEEDDSEKPDPKKPYSLGPKISDWDEQRSTWLEQNPNFPNFIGPNKPRVLLVTGSSP 146

Query: 137 SPCKNPIGDHFLLRFFKNKVDYCRIHGYDIFYNNLLLHPKMTSFWAKLPVVRAAMLAHPE 196
            PC+NP+GDH+LL+  KNK+DYCR+HG +IFYN  LL  +M  FWAKLP++R  +L+HPE
Sbjct: 147 KPCENPVGDHYLLKSIKNKIDYCRLHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPE 206

Query: 197 AEWIWWVDSDAMFTDMEFKLPLRRYDYKNHNLVVHGWAKLIYGAKSWTALNAG 249
            E++WW+DSDAMFTDM F+LP  R  YK++N V+HGW +++Y  K+W  LN G
Sbjct: 207 VEFLWWMDSDAMFTDMAFELPWER--YKDYNFVMHGWNEMVYDQKNWIGLNTG 257


>GSVIVT01007963001 assembled CDS
          Length = 294

 Score =  143 bits (361), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 83/113 (73%), Gaps = 2/113 (1%)

Query: 178 TSFWAKLPVVRAAMLAHPEAEWIWWVDSDAMFTDMEFKLPLRRYDYKNHNLVVHGWAKLI 237
             +WAKLP++R  ML+HPE EWIWW+DSDA+FTDM F++PL +YD  N+NLVVHG+  L+
Sbjct: 71  AGYWAKLPLIRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLSKYD--NYNLVVHGYPDLM 128

Query: 238 YGAKSWTALNAGVFLIRNCQWSMDFIDTWASMGPMSPDVEKWGQIQRSLFKDK 290
           +  KSW ALN G FL RNCQWS+D +D WA MGP  P  ++ G+I  +  K +
Sbjct: 129 FNQKSWIALNTGSFLFRNCQWSLDLLDAWAPMGPKGPIRDEAGKILTANLKGR 181