Jatropha Genome Database

JcCA0116381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0116381.10 - phase: 1 /partial
         (196 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038219001 assembled CDS                                       302   7e-83
GSVIVT01004003001 assembled CDS                                       287   3e-78

>GSVIVT01038219001 assembled CDS
          Length = 482

 Score =  302 bits (773), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 146/191 (76%), Positives = 170/191 (89%), Gaps = 2/191 (1%)

Query: 1   VTGDPGKMVAVQRNLKKFGIREIARTGKIALRREKMGEFAPFWRFSAASYPDL-GEIRPD 59
           VTGDPGKMVAVQRNL KFGIREIARTGKIALRREKMGE APFWRFSA+SYPDL GEI P+
Sbjct: 197 VTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKMGESAPFWRFSASSYPDLEGEI-PE 255

Query: 60  DAPLGSKCRVVRGEDDTSVGGDVYPVEPSDDFKVAQVLDAHWGVLNEDDTTGLRSHTLSM 119
           +  + ++ + +  E D SVGGDVYPVEPSD F   +VLDAHWGVL ++DT+GLRSHTLSM
Sbjct: 256 NTFVETRTKTLNSESDASVGGDVYPVEPSDGFLFNKVLDAHWGVLYDEDTSGLRSHTLSM 315

Query: 120 LVNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISKLVQQLYKL 179
           +VN+APGVLN+VTGVFARRGYNIQSLAVGH+E EG+SRITTVVPGTDESI+KLVQQL KL
Sbjct: 316 VVNNAPGVLNLVTGVFARRGYNIQSLAVGHAEVEGLSRITTVVPGTDESINKLVQQLKKL 375

Query: 180 VELHEVRNFSN 190
           ++LH+VR+ ++
Sbjct: 376 IDLHDVRDITH 386



 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 57/82 (69%), Gaps = 2/82 (2%)

Query: 110 TGLRSHTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESI 169
           + +R HT+S+ V D  G++N + GVFARRGYNI SLAVG ++ + +   T VV GT+  +
Sbjct: 73  SKVRRHTISVFVGDESGMINRIAGVFARRGYNIDSLAVGLNKDKAL--FTIVVSGTERVL 130

Query: 170 SKLVQQLYKLVELHEVRNFSNQ 191
            ++V+QL+KLV + +V + S +
Sbjct: 131 QQVVEQLHKLVNVLKVEDISTE 152


>GSVIVT01004003001 assembled CDS
          Length = 476

 Score =  287 bits (734), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 141/190 (74%), Positives = 159/190 (83%)

Query: 1   VTGDPGKMVAVQRNLKKFGIREIARTGKIALRREKMGEFAPFWRFSAASYPDLGEIRPDD 60
           VTGDPGKMVAVQRNL KFGI+E+ARTGKIALRREKMGE APFWRFSAASYPDL E  P +
Sbjct: 193 VTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKMGETAPFWRFSAASYPDLEETIPVN 252

Query: 61  APLGSKCRVVRGEDDTSVGGDVYPVEPSDDFKVAQVLDAHWGVLNEDDTTGLRSHTLSML 120
           A + +  R + G   TS GGDVYPVEP +DF V  VLD HWG LN++D++GLRSHTLSML
Sbjct: 253 ALVRNVKRPLNGNPSTSPGGDVYPVEPFNDFSVNPVLDPHWGALNDEDSSGLRSHTLSML 312

Query: 121 VNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISKLVQQLYKLV 180
           VND PGVLNIVTGV +RR YNIQSLAVG +E EG S ITTVVPGTDESISKLVQQL KL+
Sbjct: 313 VNDTPGVLNIVTGVISRRSYNIQSLAVGPAEMEGRSHITTVVPGTDESISKLVQQLQKLI 372

Query: 181 ELHEVRNFSN 190
           +LHEVR+ ++
Sbjct: 373 DLHEVRDITH 382



 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 2/80 (2%)

Query: 112 LRSHTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISK 171
           ++ HT+S+ V D  G++N + GVFARRGYNI+SLAVG +E + +   T VV GT+  + +
Sbjct: 71  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNEDKAL--FTIVVSGTETVLRQ 128

Query: 172 LVQQLYKLVELHEVRNFSNQ 191
           +V+QL KLV + +V++ S +
Sbjct: 129 VVEQLNKLVNVLKVKDLSRE 148