Jatropha Genome Database

JcCA0116311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0116311.10 + phase: 0 /partial
         (364 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025457001 assembled CDS                                       521   e-148
GSVIVT01025279001 assembled CDS                                       518   e-147
GSVIVT01024772001 assembled CDS                                        96   2e-20

>GSVIVT01025457001 assembled CDS
          Length = 604

 Score =  521 bits (1341), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 261/357 (73%), Positives = 293/357 (82%), Gaps = 1/357 (0%)

Query: 1   MESIIRRCSVMNPKEYAKASNEGDDVFLCEYEYDIHWHTFKRLAEVDNCXXXXXXXXXXX 60
           MES+IR C+VM+PKE+ KA+NEGDD+FLCEYEYD+HWH+FKRLAE++N            
Sbjct: 99  MESVIRLCNVMSPKEFTKANNEGDDIFLCEYEYDMHWHSFKRLAEINNGEEGNEEADNDV 158

Query: 61  XWNSSKDAESDTDEDIEYEEESVKNLQAKASSTHVLAANLRKGQFFGLQRIGVKRIPEHV 120
            W+  KD+ SDT+ED+EYEE +V NL +  S  H +AAN  KG+ FGL +IG K+I  HV
Sbjct: 159 DWDYGKDSGSDTEEDMEYEEGNVNNLPSGPSPAHAVAANSWKGRIFGLNKIGTKKILGHV 218

Query: 121 RCHXXXXXXXXXXXXXXXXXPKSQPCRNKEMEEITAFIKGAIYDDQCLGRCLYIHGVPGT 180
           RCH                 PKS PCR KEMEEITAFIKGAI +DQCLGRCLYIHGVPGT
Sbjct: 219 RCHKQTELERAKATLLLTTLPKSLPCRIKEMEEITAFIKGAICNDQCLGRCLYIHGVPGT 278

Query: 181 GKTMSVLAVMRNLKSEVDAGNMRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKAL 240
           GKTMSVL+VMRNL+SEVDAG+++PYCFV++NGLKLAS ENIYRVIYEALSGHRV WKKAL
Sbjct: 279 GKTMSVLSVMRNLRSEVDAGSIKPYCFVDINGLKLASSENIYRVIYEALSGHRVGWKKAL 338

Query: 241 HLLNERFSDGKK-GKGDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIAN 299
           HLLNERF+D  K  K + RPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIAN
Sbjct: 339 HLLNERFADESKIAKEEIRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIAN 398

Query: 300 TMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDVFEKQAIEFASRKV 356
           TMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEII SRL+GID FE+QAIEFASR V
Sbjct: 399 TMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIIPSRLQGIDAFERQAIEFASRTV 455


>GSVIVT01025279001 assembled CDS
          Length = 979

 Score =  518 bits (1333), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 269/357 (75%), Positives = 298/357 (83%), Gaps = 1/357 (0%)

Query: 1   MESIIRRCSVMNPKEYAKASNEGDDVFLCEYEYDIHWHTFKRLAEVDNCXXXXXXXXXXX 60
           MESIIR C VM+PKE+ KA+NEGDD+FLCEYEYDIHWH+FKRLAE++N            
Sbjct: 456 MESIIRLCYVMSPKEFTKANNEGDDIFLCEYEYDIHWHSFKRLAEINNGEEGNEEADNDV 515

Query: 61  XWNSSKDAESDTDEDIEYEEESVKNLQAKASSTHVLAANLRKGQFFGLQRIGVKRIPEHV 120
            W+  KD+ SDT+ED+EYEEE+V NL +  S  H +AAN  KG+ FGL++IG K+IP HV
Sbjct: 516 DWDYGKDSGSDTEEDMEYEEENVNNLPSGPSPAHAVAANSWKGRIFGLKKIGTKKIPGHV 575

Query: 121 RCHXXXXXXXXXXXXXXXXXPKSQPCRNKEMEEITAFIKGAIYDDQCLGRCLYIHGVPGT 180
           RCH                 PKS PCR KEMEEITAFIKGAI +DQCLGRCLYIHGVPGT
Sbjct: 576 RCHKQTELERAKATLLLATLPKSLPCRTKEMEEITAFIKGAICNDQCLGRCLYIHGVPGT 635

Query: 181 GKTMSVLAVMRNLKSEVDAGNMRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKAL 240
           GKTMSVL+VMRNL+SEVDAG+++PYCFV++NGLKLASPENIYRVIYEALSGHRV WKKAL
Sbjct: 636 GKTMSVLSVMRNLRSEVDAGSIKPYCFVDINGLKLASPENIYRVIYEALSGHRVGWKKAL 695

Query: 241 HLLNERFSDGKK-GKGDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIAN 299
           HLLNERF+D  K  K + RPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIAN
Sbjct: 696 HLLNERFADESKIAKEEIRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIAN 755

Query: 300 TMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDVFEKQAIEFASRKV 356
           TMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGID FE+QAIEFASRKV
Sbjct: 756 TMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDAFERQAIEFASRKV 812


>GSVIVT01024772001 assembled CDS
          Length = 509

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 109/220 (49%), Gaps = 6/220 (2%)

Query: 141 PKSQPCRNKEMEEITAFIKGAIYDDQCLGRCLYIHGVPGTGKTMSVLAVMRNLKSEVDAG 200
           P +  CR  E   I  F K  I  ++     LY  G PGTGK++S+  V R L       
Sbjct: 110 PSTVVCREDEQNRIMDFCKACIEHEK--AGSLYACGCPGTGKSLSMEKVRRALVDWAGQA 167

Query: 201 NMRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHLLNERFSDGKKGKGDDRPC 260
             +P   + +N   L + + I+  I E     + +      L + R    KK +      
Sbjct: 168 GFQPPDLLSINCTSLTNTQEIFSKILEKHQPRKKTKSSTSPLQHLRNIYSKKQQSSGMKM 227

Query: 261 ILLI-DELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISS-RMGIQ 318
           +L+I DELD L+TR+++VL+++    T P S  I+IG++N +DL ++ LP++ S      
Sbjct: 228 MLIIADELDYLITRDRTVLHDLFMLTTLPFSSCILIGVSNAIDLADRFLPKLQSLNCKPM 287

Query: 319 RLCFGPYNYQQLQEIISSRLKGI--DVFEKQAIEFASRKV 356
            + F  Y+  Q+ +I+  RL  +   VF+ QA+E  +RKV
Sbjct: 288 VVTFRAYSKDQILKILQQRLMALPFPVFQPQALELCARKV 327