Jatropha Genome Database

JcCA0116171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0116171.10 - phase: 0 
         (268 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018377001 assembled CDS                                       442   e-125
GSVIVT01026824001 assembled CDS                                       318   2e-87
GSVIVT01035291001 assembled CDS                                       193   7e-50
GSVIVT01016997001 assembled CDS                                       192   2e-49
GSVIVT01015311001 assembled CDS                                       191   3e-49
GSVIVT01013039001 assembled CDS                                       181   2e-46

>GSVIVT01018377001 assembled CDS
          Length = 625

 Score =  442 bits (1136), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/259 (83%), Positives = 226/259 (87%), Gaps = 4/259 (1%)

Query: 1   MSNFSKQIRASSSLINRLKQKMTNPDVLTQTSRSFTTTEGHRPTIVHKRSLDILHDPWFN 60
           MSNF +QI+  SSLI RLK + +N   +    RSFTTTEGHRP++VHKRSLDILHDPWFN
Sbjct: 1   MSNFCRQIKLPSSLIRRLKHRSSNS--MLSGRRSFTTTEGHRPSLVHKRSLDILHDPWFN 58

Query: 61  KGTAFSMTEXXXXXXXXXXPPNVMSPEQQIERFMADLKRLEVHARDGPSDPNYLAKWRIL 120
           KGTAFSMTE          PP VMSPE QIERFM DLKRLEV+ARDGPSDP  LAKWRIL
Sbjct: 59  KGTAFSMTERDRLDLRGLLPPTVMSPEMQIERFMVDLKRLEVNARDGPSDPYALAKWRIL 118

Query: 121 NRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAADRGEMMS 180
           NRLHDRNETMYYKVLI NIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAADRGEMMS
Sbjct: 119 NRLHDRNETMYYKVLINNIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAADRGEMMS 178

Query: 181 MVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQRVLPVMIDV 240
           MVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQRVLPVMIDV
Sbjct: 179 MVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQRVLPVMIDV 238

Query: 241 GTNNEKLLKNPLCKYFSVQ 259
           GTNNEKLLK+PL  Y  +Q
Sbjct: 239 GTNNEKLLKDPL--YLGLQ 255


>GSVIVT01026824001 assembled CDS
          Length = 605

 Score =  318 bits (815), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 148/210 (70%), Positives = 169/210 (80%)

Query: 43  PTIVHKRSLDILHDPWFNKGTAFSMTEXXXXXXXXXXPPNVMSPEQQIERFMADLKRLEV 102
           P IVHKR  DILHDPWFNK T F +TE          PP V+S E Q  RFM   + LE 
Sbjct: 27  PCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEHQYARFMESYRSLEK 86

Query: 103 HARDGPSDPNYLAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLF 162
           +    P     LAKWRILNRLHDRNET+YY+VLI NI+++API+YTPTVGLVCQNYSGLF
Sbjct: 87  NTLGQPDSVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLF 146

Query: 163 RRPRGMYFSAADRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLY 222
           RRPRGMYFS  D+GEMMSM+YNWPA QVDMIV+TDGSRILGLGDLGVQGIGI IGKLD+Y
Sbjct: 147 RRPRGMYFSGKDKGEMMSMIYNWPAHQVDMIVITDGSRILGLGDLGVQGIGIPIGKLDMY 206

Query: 223 VAAAGINPQRVLPVMIDVGTNNEKLLKNPL 252
           VAAAGINPQR+LP+M+DVGTNN++LL++ L
Sbjct: 207 VAAAGINPQRILPIMLDVGTNNQRLLEDRL 236


>GSVIVT01035291001 assembled CDS
          Length = 575

 Score =  193 bits (490), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 92/198 (46%), Positives = 128/198 (64%), Gaps = 10/198 (5%)

Query: 53  ILHDPWFNKGTAFSMTEXXXXXXXXXXPPNVMSPEQQIERFMADLKRLEVHARDGPSDPN 112
           +L DP  NKG AF+  E          PP V++ + Q +R M +L++ +V          
Sbjct: 39  LLRDPHHNKGLAFTENERDAHYLRGLLPPAVLNQDLQEKRLMHNLRQYKVP--------- 89

Query: 113 YLAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSA 172
            L ++  +  L +RNE ++YK+LI N+EE  P+VYTPTVG  CQ Y  +FRRP+G+Y S 
Sbjct: 90  -LQRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISL 148

Query: 173 ADRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQR 232
            ++G+++ ++ NWP   + +IVVTDG RILGLGDLG QG+GI +GKL LY A  G+ P  
Sbjct: 149 KEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGLRPSA 208

Query: 233 VLPVMIDVGTNNEKLLKN 250
            LPV IDVGTNNE+LLK+
Sbjct: 209 CLPVTIDVGTNNEQLLKD 226


>GSVIVT01016997001 assembled CDS
          Length = 640

 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/207 (43%), Positives = 131/207 (63%), Gaps = 10/207 (4%)

Query: 44  TIVHKRSLDILHDPWFNKGTAFSMTEXXXXXXXXXXPPNVMSPEQQIERFMADLKRLEVH 103
           TI       +L +P  NKG AF+  E          PP V+S + Q+++ MA++++  V 
Sbjct: 95  TITVASGYSLLRNPHHNKGLAFTEKERDHHYLRGLLPPAVVSQDLQVKKLMANIRQYTVP 154

Query: 104 ARDGPSDPNYLAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFR 163
                     L K+  +  L +RNE ++YK+L+ N+EE  P+VYTPTVG  CQ Y G+ R
Sbjct: 155 ----------LQKYMAMMDLQERNEKLFYKLLMDNVEELLPVVYTPTVGEACQKYGGILR 204

Query: 164 RPRGMYFSAADRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLYV 223
           RP+G++ S  ++G+++ ++ NWP + + +IVVTDG RILGLGDLG QG+GI +GKL LY 
Sbjct: 205 RPQGLFISLNEKGKILEVLKNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYT 264

Query: 224 AAAGINPQRVLPVMIDVGTNNEKLLKN 250
           A  G+ P   LPV IDVGTNN+KLL +
Sbjct: 265 ALGGVRPSACLPVTIDVGTNNQKLLDD 291


>GSVIVT01015311001 assembled CDS
          Length = 591

 Score =  191 bits (486), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/207 (44%), Positives = 127/207 (61%), Gaps = 10/207 (4%)

Query: 44  TIVHKRSLDILHDPWFNKGTAFSMTEXXXXXXXXXXPPNVMSPEQQIERFMADLKRLEVH 103
           T+       +L DP  NKG AF+  E          PP V + E Q  + M  +++ +V 
Sbjct: 46  TVSVASGYSLLRDPRHNKGLAFNDKERDAHYLCGLLPPVVSTQELQERKLMNSIRQYQVP 105

Query: 104 ARDGPSDPNYLAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFR 163
                     L K+  +  L +RNE ++YK+LI N+EE  P+VYTPTVG  CQ Y  +FR
Sbjct: 106 ----------LQKYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFR 155

Query: 164 RPRGMYFSAADRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLYV 223
           RP+G+Y S  ++G+++ ++ NWP  ++ +IVVTDG RILGLGDLG QG+GI +GKL LY 
Sbjct: 156 RPQGLYISLKEKGKILEVLKNWPERRIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYT 215

Query: 224 AAAGINPQRVLPVMIDVGTNNEKLLKN 250
           A  G+ P   LP+ IDVGTNNEKLL N
Sbjct: 216 ALGGVRPSACLPITIDVGTNNEKLLAN 242


>GSVIVT01013039001 assembled CDS
          Length = 432

 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/213 (43%), Positives = 129/213 (60%), Gaps = 13/213 (6%)

Query: 41  HRPTIVHK---RSLDILHDPWFNKGTAFSMTEXXXXXXXXXXPPNVMSPEQQIERFMADL 97
           H P I+H        +L DP  NKG AF+  E          PP V++ + Q +R M +L
Sbjct: 30  HVPHILHHIRTSGYTLLRDPHHNKGLAFTEKERDAHYLRGLLPPAVLNQDLQEKRLMHNL 89

Query: 98  KRLEVHARDGPSDPNYLAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQN 157
           ++ +V        P  L ++  +    +RNE ++YK+LI N+EE  P+VYTPTVG  CQ 
Sbjct: 90  RQYKV--------P--LQRYMAMMDFQERNERLFYKLLIDNVEELLPVVYTPTVGEACQK 139

Query: 158 YSGLFRRPRGMYFSAADRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAIG 217
           Y  +FRRP+ +Y      G+++ ++ NWP   + +IVVT+G RILGLGDLG QG+GI +G
Sbjct: 140 YGSIFRRPQSLYIIDFFMGKILEVLKNWPERSIQVIVVTNGERILGLGDLGCQGMGIPVG 199

Query: 218 KLDLYVAAAGINPQRVLPVMIDVGTNNEKLLKN 250
           KL LY    G++P   LPV IDVGTNNE+LLK+
Sbjct: 200 KLSLYTTLGGLHPSVCLPVTIDVGTNNEQLLKD 232