Jatropha Genome Database

JcCA0116061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0116061.10 - phase: 0 /partial
         (180 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018444001 assembled CDS                                       277   2e-75

>GSVIVT01018444001 assembled CDS
          Length = 240

 Score =  277 bits (708), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 133/173 (76%), Positives = 146/173 (84%), Gaps = 5/173 (2%)

Query: 5   GQTGTKKRKMGERREDGIGGKNSSSKTKWPLIKPKKNLQITRIKDTDLFTVQNFFTPAES 64
            + G+KKRKMGE R      K ++ KT WPLIKPK NLQ+T +KD+ LFTVQNFFT AES
Sbjct: 2   AEIGSKKRKMGEERR-----KANAKKTDWPLIKPKPNLQVTHLKDSHLFTVQNFFTSAES 56

Query: 65  KAFIKAAESIGFVHQGSLGPTRGEAYRDNDRVSSNDSALANAVWESGLNKLFSDIKIRGK 124
           KAF+K AES+GF HQGSLGPT+GEAYRDNDR S ND  LA  +W+SGLNKLFSDIKIRGK
Sbjct: 57  KAFVKIAESMGFTHQGSLGPTKGEAYRDNDRTSVNDPVLAYTIWQSGLNKLFSDIKIRGK 116

Query: 125 VAVGLNPNIRFYRYKVGQRFGRHIDESVDLGDGKRTHYTLLIYLSGDSKAKIK 177
           VAVGLNPNIRFYRYKVGQRFGRHIDESVDLG+GKRTHYTLLIYLSG SK K K
Sbjct: 117 VAVGLNPNIRFYRYKVGQRFGRHIDESVDLGEGKRTHYTLLIYLSGGSKQKTK 169