Jatropha Genome Database

JcCA0115811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0115811.10 - phase: 0 /partial
         (261 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019417001 assembled CDS                                       200   6e-52

>GSVIVT01019417001 assembled CDS
          Length = 370

 Score =  200 bits (508), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 147/239 (61%), Gaps = 37/239 (15%)

Query: 25  ETEAFYPEEFKVEEVSPEWWGYKLGFVPGGLLGAQNKKKSSKTGNAQKCNERTAFLEEDQ 84
           +   F  E  K + VS +WWG+K GFV GGLLGA  KK+S  T + Q  N+RTAF EEDQ
Sbjct: 167 DIHVFNVEGNKDQSVSEDWWGHKYGFVSGGLLGASTKKRSRPTDSTQNFNKRTAFFEEDQ 226

Query: 85  ENLYKLVQDNATAGKQGLGIKSQPKKIAGVRFQGKKTXXXXXXXXXXXXXXXXXXXXXXX 144
           ENLYKLVQD AT GKQGLGIK +PKK+AG  F+GKKT                       
Sbjct: 227 ENLYKLVQDKATTGKQGLGIKDRPKKVAGCYFEGKKT----------------------- 263

Query: 145 XENHNDAPAVENVEEKVDNEISANFGSLGKRKRDAPGKNVD--EQKVKLKKLCKRILRQV 202
             + ND+          D+E ++++GS  K K+    +  +  E KVKLK+LCK++LRQV
Sbjct: 264 --SFNDS----------DDEDASDYGSSAKSKQGDMFETEENGEPKVKLKRLCKQLLRQV 311

Query: 203 PGESXXXXXXXXXIEEHSSTVFSNFSSKRDALTHLKQKLEGSQKFCVDGKRVSLMCRRG 261
           P +S         I+EHS  +FSNFSSKRDAL++LKQKLEGS+KF + GK V+L  +RG
Sbjct: 312 PEKSLKLKQLKVLIDEHSPYIFSNFSSKRDALSYLKQKLEGSRKFSLKGKEVTLSSKRG 370