Jatropha Genome Database

JcCA0113151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0113151.10 + phase: 1 /partial
         (296 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016997001 assembled CDS                                       516   e-147
GSVIVT01035291001 assembled CDS                                       497   e-141
GSVIVT01015311001 assembled CDS                                       495   e-141
GSVIVT01013039001 assembled CDS                                       407   e-114
GSVIVT01018377001 assembled CDS                                       233   5e-62
GSVIVT01026824001 assembled CDS                                       217   4e-57

>GSVIVT01016997001 assembled CDS
          Length = 640

 Score =  516 bits (1329), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 245/291 (84%), Positives = 266/291 (91%)

Query: 6   RGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACL 65
           +G+ILEVL+NWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGGVRPSACL
Sbjct: 216 KGKILEVLKNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACL 275

Query: 66  PVTIDVGTNNEKLLNDEFYIGLRQRRATGQEYSELLHEFMTAVKKNYGERILVQFEDFAN 125
           PVTIDVGTNN+KLL+DEFYIGLRQ+RATGQEY+EL+HEFM AVK+NYGE++LVQFEDFAN
Sbjct: 276 PVTIDVGTNNQKLLDDEFYIGLRQKRATGQEYAELIHEFMCAVKQNYGEKVLVQFEDFAN 335

Query: 126 HNAFDLLAKYGTTHLVFNDDIQGTASVVXXXXXXXXXXXXXXXXDHKFLFLGAGEAGTGI 185
           HNAFDLLA+YGTTHLVFNDDIQGTASVV                +H FLFLGAGEAGTGI
Sbjct: 336 HNAFDLLARYGTTHLVFNDDIQGTASVVLAGLISALNLVGGTLAEHTFLFLGAGEAGTGI 395

Query: 186 AELIALEMSKENNMPVEETRKKIWLVDSKGLIVSSRMDSLQHFKKPWAHDHEPMKTLLDA 245
           AELIALEMSK+   P+EETRKKIWLVDSKGLIVSSRMDSLQHFKKPWAH+HEP+K L+DA
Sbjct: 396 AELIALEMSKQTQAPLEETRKKIWLVDSKGLIVSSRMDSLQHFKKPWAHEHEPIKNLVDA 455

Query: 246 VNDIKPTVLIGTSGVGRTFTKEVVEAMASFYERPIILALSNPTSQSECTAE 296
           V  IKPTVLIG+SGVGRTFTKEVVEAMASF E+PIILALSNPTSQSECTAE
Sbjct: 456 VKAIKPTVLIGSSGVGRTFTKEVVEAMASFNEKPIILALSNPTSQSECTAE 506


>GSVIVT01035291001 assembled CDS
          Length = 575

 Score =  497 bits (1279), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 235/291 (80%), Positives = 261/291 (89%)

Query: 6   RGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACL 65
           +G+ILEVL+NWPE++IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSACL
Sbjct: 151 KGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGLRPSACL 210

Query: 66  PVTIDVGTNNEKLLNDEFYIGLRQRRATGQEYSELLHEFMTAVKKNYGERILVQFEDFAN 125
           PVTIDVGTNNE+LL DEFYIGL+QRRATGQEY+ELLHEFM AVK+NYGER+L+QFEDFAN
Sbjct: 211 PVTIDVGTNNEQLLKDEFYIGLKQRRATGQEYAELLHEFMCAVKQNYGERVLIQFEDFAN 270

Query: 126 HNAFDLLAKYGTTHLVFNDDIQGTASVVXXXXXXXXXXXXXXXXDHKFLFLGAGEAGTGI 185
           HNAF+LLAKY  THLVFNDDIQGTASVV                +H FLFLGAGEAGTGI
Sbjct: 271 HNAFELLAKYSKTHLVFNDDIQGTASVVLAGLIASLKLVGGSLAEHTFLFLGAGEAGTGI 330

Query: 186 AELIALEMSKENNMPVEETRKKIWLVDSKGLIVSSRMDSLQHFKKPWAHDHEPMKTLLDA 245
           AELIALE+SK+   P+EETRKKIWLVDSKGLIV SRM+SLQHFKKPWAHDHEP++ LLDA
Sbjct: 331 AELIALEISKQTKAPLEETRKKIWLVDSKGLIVHSRMESLQHFKKPWAHDHEPIRALLDA 390

Query: 246 VNDIKPTVLIGTSGVGRTFTKEVVEAMASFYERPIILALSNPTSQSECTAE 296
           V  IKPTVLIG+SGVG+TFTKEVVEAM SF ++P+ILALSNPTSQSECTAE
Sbjct: 391 VKSIKPTVLIGSSGVGKTFTKEVVEAMTSFNKKPLILALSNPTSQSECTAE 441


>GSVIVT01015311001 assembled CDS
          Length = 591

 Score =  495 bits (1275), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 236/291 (81%), Positives = 259/291 (89%)

Query: 6   RGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACL 65
           +G+ILEVL+NWPE+ IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGGVRPSACL
Sbjct: 167 KGKILEVLKNWPERRIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACL 226

Query: 66  PVTIDVGTNNEKLLNDEFYIGLRQRRATGQEYSELLHEFMTAVKKNYGERILVQFEDFAN 125
           P+TIDVGTNNEKLL +EFYIGL+QRRATG+EYSE L EFM+AVK+NYGE++L+QFEDFAN
Sbjct: 227 PITIDVGTNNEKLLANEFYIGLKQRRATGKEYSEFLQEFMSAVKQNYGEKVLIQFEDFAN 286

Query: 126 HNAFDLLAKYGTTHLVFNDDIQGTASVVXXXXXXXXXXXXXXXXDHKFLFLGAGEAGTGI 185
           HNAFDLLAKYGTTHLVFNDDIQGTASVV                DHKFLFLGAGEAGTGI
Sbjct: 287 HNAFDLLAKYGTTHLVFNDDIQGTASVVLAGIVSALRLLGGTLADHKFLFLGAGEAGTGI 346

Query: 186 AELIALEMSKENNMPVEETRKKIWLVDSKGLIVSSRMDSLQHFKKPWAHDHEPMKTLLDA 245
           AELIALEMSK+   P+EETRKKIWLVDSKGLIVSSR DSLQ FKKPWAH+HEP+K LL A
Sbjct: 347 AELIALEMSKQTKCPIEETRKKIWLVDSKGLIVSSRKDSLQQFKKPWAHEHEPVKDLLHA 406

Query: 246 VNDIKPTVLIGTSGVGRTFTKEVVEAMASFYERPIILALSNPTSQSECTAE 296
           V  IKPTVLIG+SGVG+ FTKEV+EAMAS  E+P+ILALSNPTSQSECTAE
Sbjct: 407 VKVIKPTVLIGSSGVGKAFTKEVIEAMASCNEKPLILALSNPTSQSECTAE 457


>GSVIVT01013039001 assembled CDS
          Length = 432

 Score =  407 bits (1046), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/272 (72%), Positives = 225/272 (82%), Gaps = 8/272 (2%)

Query: 4   FYRGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSA 63
           F+ G+ILEVL+NWPE++IQVIVVT+GERILGLGDLGCQGMGIPVGKL+LYT LGG+ PS 
Sbjct: 155 FFMGKILEVLKNWPERSIQVIVVTNGERILGLGDLGCQGMGIPVGKLSLYTTLGGLHPSV 214

Query: 64  CLPVTIDVGTNNEKLLNDEFYIGLRQRRATGQEYSELLHEFMTAVKKNYGERILVQFEDF 123
           CLPVTIDVGTNNE+LL DEFYIGL+QRRATGQEY+ELLHE M AVK+NYGER+L+   +F
Sbjct: 215 CLPVTIDVGTNNEQLLKDEFYIGLKQRRATGQEYAELLHELMCAVKQNYGERVLIHV-NF 273

Query: 124 ANHNAFDLLAKYGTTHLVFNDDIQGTASVVXXXXXXXXXXXXXXXXDHKFLFLGAGEAGT 183
           ANHNAF+LLAKY  THL       GT SVV                +  FLFLGAGEAGT
Sbjct: 274 ANHNAFELLAKYSKTHL-------GTTSVVLAELIASLKLVGGSLAELTFLFLGAGEAGT 326

Query: 184 GIAELIALEMSKENNMPVEETRKKIWLVDSKGLIVSSRMDSLQHFKKPWAHDHEPMKTLL 243
           GIAELIALE+SK+   P+EETRKKIWLV+SKGLIV SRM+SLQHFKKPWAH+HEP++ L+
Sbjct: 327 GIAELIALEISKQTKAPLEETRKKIWLVNSKGLIVHSRMESLQHFKKPWAHEHEPIRALV 386

Query: 244 DAVNDIKPTVLIGTSGVGRTFTKEVVEAMASF 275
           DAV  IKPTVLIG+ G+G+TFTKEVVEAM SF
Sbjct: 387 DAVQSIKPTVLIGSLGIGKTFTKEVVEAMTSF 418


>GSVIVT01018377001 assembled CDS
          Length = 625

 Score =  233 bits (595), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 130/305 (42%), Positives = 178/305 (58%), Gaps = 15/305 (4%)

Query: 6   RGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACL 65
           RG ++ ++ NWP + + +IVVTDG RILGLGDLG QG+GI +GKL LY A  G+ P   L
Sbjct: 173 RGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQRVL 232

Query: 66  PVTIDVGTNNEKLLNDEFYIGLRQRRATGQEYSELLHEFMTAVKKNYGERILVQFEDFAN 125
           PV IDVGTNNEKLL D  Y+GL++ R  G EY  ++ EFM AV   +   ++VQFEDF +
Sbjct: 233 PVMIDVGTNNEKLLKDPLYLGLQEHRLDGDEYLAVIDEFMEAVFTRW-PHVIVQFEDFQS 291

Query: 126 HNAFDLLAKYGTTHLVFNDDIQGTASVVXXXXXXXXXXXXXXXXD---HKFLFLGAGEAG 182
             AF LL +Y +T+ +FNDD+QGTA V                 D    K +  GAG AG
Sbjct: 292 KWAFKLLQRYRSTYRMFNDDVQGTAGVAIAGLLGAVRAQGKPMIDFPKQKIVVAGAGSAG 351

Query: 183 TGIAELIALEMSK---ENNMPVEETRKKIWLVDSKGLIVSSR----MDSLQHFKKPWAHD 235
            G+       M++    N    +    + W+VD++GLI  +R     D+L   +K    D
Sbjct: 352 IGVVNAARKTMARMLGNNESAFDSAGSQFWVVDAEGLITEARDNIDPDALPFARKVKEID 411

Query: 236 HEPMK---TLLDAVNDIKPTVLIGTSGVGRTFTKEVVEAMA-SFYERPIILALSNPTSQS 291
            + ++   +L + V  +KP VL+G S VG  F+KEV+EA+  S   RP I A+SNPT  +
Sbjct: 412 RQGLREGASLAEVVKQVKPDVLLGLSAVGGLFSKEVLEALKDSTSTRPAIFAMSNPTKNA 471

Query: 292 ECTAE 296
           ECT E
Sbjct: 472 ECTPE 476


>GSVIVT01026824001 assembled CDS
          Length = 605

 Score =  217 bits (553), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 120/300 (40%), Positives = 170/300 (56%), Gaps = 12/300 (4%)

Query: 6   RGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACL 65
           +G ++ ++ NWP   + +IV+TDG RILGLGDLG QG+GIP+GKL +Y A  G+ P   L
Sbjct: 159 KGEMMSMIYNWPAHQVDMIVITDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRIL 218

Query: 66  PVTIDVGTNNEKLLNDEFYIGLRQRRATGQEYSELLHEFMTAVKKNYGERILVQFEDFAN 125
           P+ +DVGTNN++LL D  Y+GLRQ R  G+EY  ++ E M A+   +  + +VQFEDF  
Sbjct: 219 PIMLDVGTNNQRLLEDRLYLGLRQPRLEGEEYLSVVDELMEAIFTRW-PKAIVQFEDFQM 277

Query: 126 HNAFDLLAKYGTTHLVFNDDIQGTASVVXXXXXXXXXXXXXXXXD---HKFLFLGAGEAG 182
             AF+ L +Y     +FNDDIQGTA V                 D    K + +GAG AG
Sbjct: 278 KWAFETLQRYRKKFCMFNDDIQGTAGVALAGLLGTVRAQGRPLTDFVNQKIVVVGAGSAG 337

Query: 183 TGIAELIALEMSKENNMPVEETRKKIWLVDSKGLIVSSRMDSLQHFKKPWAHDHEPMK-- 240
            G+  + A   S+           + +L+D  GLI   R  ++     P+A     ++  
Sbjct: 338 IGVLNMAAQAASRIAGNTGASPNHQFYLLDKDGLITKER-KNIDPAAAPFAKGPGEIEGL 396

Query: 241 ----TLLDAVNDIKPTVLIGTSGVGRTFTKEVVEAM-ASFYERPIILALSNPTSQSECTA 295
               +LL+ V  +KP VL+G SGVG  F +EV++AM  S   +P I A+SNPT  +ECTA
Sbjct: 397 REGASLLEVVKKVKPHVLLGLSGVGGVFNEEVLKAMRESDSTKPAIFAMSNPTMNAECTA 456