Jatropha Genome Database

JcCA0111951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0111951.10 + phase: 0 /partial
         (308 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008562001 assembled CDS                                       442   e-124
GSVIVT01022373001 assembled CDS                                       335   2e-92
GSVIVT01020202001 assembled CDS                                       137   8e-33
GSVIVT01024516001 assembled CDS                                        55   6e-08

>GSVIVT01008562001 assembled CDS
          Length = 541

 Score =  442 bits (1137), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/270 (80%), Positives = 238/270 (88%)

Query: 22  GRKKASENGGGPDPSRKSFNSSRPGGLTGERTVKRLRLSKALTVPESTSIYDACRRMAAR 81
           G+KKASENG GPD +RKS  S+R  GLTGERTVKRLRLS+ALTVP++TSIY+ACRRMAAR
Sbjct: 20  GKKKASENGAGPDSARKSLASARSMGLTGERTVKRLRLSRALTVPDTTSIYEACRRMAAR 79

Query: 82  RVDALLLTDSNALLCGILTDKDIATRVIAREVNLEETPISKVMTRNPVFVLSDTLAVEAL 141
           RVDALLLTDSNALLCGILTDKDIATRVIARE+NLEETP+SKVMTRNP+FVLSDTLAVEAL
Sbjct: 80  RVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPIFVLSDTLAVEAL 139

Query: 142 QKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERXXXXXXXXXXXXXXXXXNWGTS 201
           QKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER                 NWGTS
Sbjct: 140 QKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGTS 199

Query: 202 FSGPNTFIETLRERMFRPSLSTIVPENSKVVTVSPTETVLAATKKMLEFRTSSAVVIVDS 261
            SGP+TFIETLRERMFRP+LSTI+PENSKVVTVSPT+TVL A KKMLE + S AVV V++
Sbjct: 200 LSGPSTFIETLRERMFRPALSTIIPENSKVVTVSPTDTVLTAAKKMLELKLSCAVVAVEN 259

Query: 262 KPRGILTSKDILMRVIAQNLPPDSTLVEKV 291
           +P+GILTSKDILMRVIAQNL P+ST VEKV
Sbjct: 260 RPKGILTSKDILMRVIAQNLHPESTPVEKV 289



 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 60  SKALTVPESTSIYDACRRMAARRVDALLLTDSNALLCGILTDKDIATRVIAREVNLEETP 119
           SK +TV  + ++  A ++M   ++   ++   N    GILT KDI  RVIA+ ++ E TP
Sbjct: 227 SKVVTVSPTDTVLTAAKKMLELKLSCAVVAVENRPK-GILTSKDILMRVIAQNLHPESTP 285

Query: 120 ISKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIA 175
           + KVMT NP     DT  V+AL  M  GKF HLPV++ +G V+A+ D+    + A+A
Sbjct: 286 VEKVMTPNPECATIDTPIVDALHTMHDGKFLHLPVIDRDGGVVAVADVIHITHAAVA 342


>GSVIVT01022373001 assembled CDS
          Length = 556

 Score =  335 bits (858), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 161/246 (65%), Positives = 199/246 (80%)

Query: 46  GGLTGERTVKRLRLSKALTVPESTSIYDACRRMAARRVDALLLTDSNALLCGILTDKDIA 105
           G + G RTVK+LRLSKALT+PE T++ DACRRMAARRVDA+LLTDSNALL GI+TDKDIA
Sbjct: 62  GLVDGVRTVKKLRLSKALTIPEGTTVSDACRRMAARRVDAVLLTDSNALLSGIVTDKDIA 121

Query: 106 TRVIAREVNLEETPISKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLD 165
           TRVIA E+  E+T +SK+MTR+P+FV SD+LA+EAL+KMVQGKFRHLPVVENGEVIA+LD
Sbjct: 122 TRVIAEELRPEQTVVSKIMTRHPIFVNSDSLAIEALEKMVQGKFRHLPVVENGEVIAILD 181

Query: 166 IAKCLYDAIARMERXXXXXXXXXXXXXXXXXNWGTSFSGPNTFIETLRERMFRPSLSTIV 225
           I KCLYDAI+RME+                  WG++F+ P +FIETLRERMF+P+LSTI+
Sbjct: 182 ITKCLYDAISRMEKAAEHGSAIAAAVEGVERQWGSNFTAPYSFIETLRERMFKPALSTII 241

Query: 226 PENSKVVTVSPTETVLAATKKMLEFRTSSAVVIVDSKPRGILTSKDILMRVIAQNLPPDS 285
            EN+KV  VSP++ +  A KKM E+R +S +++  SK +GILTSKDILMRV+AQNL P+ 
Sbjct: 242 AENTKVAIVSPSDPISVAAKKMREYRVNSVIIMTGSKIQGILTSKDILMRVVAQNLSPEL 301

Query: 286 TLVEKV 291
           TLVEKV
Sbjct: 302 TLVEKV 307



 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 72/120 (60%), Gaps = 2/120 (1%)

Query: 60  SKALTVPESTSIYDACRRMAARRVDALLLTDSNALLCGILTDKDIATRVIAREVNLEETP 119
           +K   V  S  I  A ++M   RV+++++  + + + GILT KDI  RV+A+ ++ E T 
Sbjct: 245 TKVAIVSPSDPISVAAKKMREYRVNSVIIM-TGSKIQGILTSKDILMRVVAQNLSPELTL 303

Query: 120 ISKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARME 178
           + KVMT NP     +T  ++AL  M  GKF HLPVV+ +G + A +D+ +  + AI+ +E
Sbjct: 304 VEKVMTPNPECATLETTILDALHIMHDGKFLHLPVVDKDGGIAACVDVLQITHAAISMVE 363


>GSVIVT01020202001 assembled CDS
          Length = 355

 Score =  137 bits (344), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 93/127 (73%), Gaps = 10/127 (7%)

Query: 50  GERTVKRLRLSKALTVPESTSIYDACRRMAARRVDALLLTDSNALLCGILTDKDIATRVI 109
           G RTV +LRLSKAL +PE  ++ DACR M+AR+VD +LLTDSNA+L GI+ DKDIATRVI
Sbjct: 38  GVRTVNKLRLSKALMIPEGITVSDACRMMSARKVDVVLLTDSNAILSGIVIDKDIATRVI 97

Query: 110 AREVNLEETPISKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVE----------NGE 159
             E+  E+T +SK+MTR+P+ V SD+LA+EAL+KMVQGK     VV+          NG+
Sbjct: 98  VEELRPEQTAVSKIMTRHPILVNSDSLAIEALEKMVQGKRLRSMVVQSWLLLKGQNANGK 157

Query: 160 VIALLDI 166
            I+LL I
Sbjct: 158 AISLLRI 164


>GSVIVT01024516001 assembled CDS
          Length = 262

 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 58/105 (55%), Gaps = 4/105 (3%)

Query: 70  SIYDACRRMAARRVDALLLT--DSNALLCGILTDKDIATRVIAREVNLEETPISKVMTR- 126
           S+YDA + M    V AL++        + GI+T++D   ++I +  + + T +  +MT  
Sbjct: 136 SVYDAVKSMTHHNVGALVVVKPGEQKSIAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 195

Query: 127 NPVFVLS-DTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCL 170
           N +  +S +T  + A+Q M   + RH+PV+++ E+I ++ I   +
Sbjct: 196 NKLITVSPNTKVLRAMQLMTDNRIRHIPVIDDKEMIGMVSIGDVV 240