Jatropha Genome Database

JcCA0109511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0109511.10 + phase: 0 
         (323 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033426001 assembled CDS                                       415   e-116

>GSVIVT01033426001 assembled CDS
          Length = 366

 Score =  415 bits (1066), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 187/288 (64%), Positives = 235/288 (81%)

Query: 21  PTFHCDLYDADLVRRIAQVFLPGLSAACVDNTTGGIFRSPASVAVEMRKEMIEYLTMRSE 80
           P+F CD +D ++V +IAQ  LPGL++ACVDNTTG +FRSPASVAV++RKEM+EYLT RSE
Sbjct: 23  PSFPCDFFDTEIVHKIAQALLPGLASACVDNTTGDLFRSPASVAVDIRKEMVEYLTQRSE 82

Query: 81  TFVAETIILEGGQNEEISDHPYDIISDFVDDFASSKRNFFSRVQGWILSEKREDKIDDFV 140
           +FVAE++ILE G + E+SDHP+DIISDFVDDFASSKRN FSRV GW+LSE+REDKIDDFV
Sbjct: 83  SFVAESVILEDGPDTEVSDHPFDIISDFVDDFASSKRNLFSRVSGWLLSERREDKIDDFV 142

Query: 141 QEMEVNGFWLSDRREVIAQNLVKNVDYKNIFYCDKKFYTAEELAEHVINCDFRTVNCTND 200
           QEME+N FWL DRR  IAQ L+KN D+KN F+C+  F +AEEL EH  NC FR++NC N+
Sbjct: 143 QEMEINSFWLLDRRAAIAQTLLKNADFKNTFHCNMNFSSAEELDEHRSNCSFRSMNCMNE 202

Query: 201 GCVSFFCASQLEKHDSTCPFKIIPCEQKCSDHIMRREMDRHCITVCPMKLVNCPSMLWVV 260
           GC S FCA+ +EKHDS CPFKIIPCEQ+CS+++MRREMDRHCITVCPMKLVNCP      
Sbjct: 203 GCNSSFCAAHMEKHDSVCPFKIIPCEQQCSENLMRREMDRHCITVCPMKLVNCPFYSIGC 262

Query: 261 PAAITRSMIQQHCLDDLNSHLVYALKNIHKEASEEDLKDRLDQIMQVS 308
            + +   M++QH  D+L+SHL+  L+  HK+ S EDLK R++Q+ ++S
Sbjct: 263 QSTVHHCMVEQHQSDNLDSHLLCVLQVTHKDVSVEDLKQRVEQLKELS 310