Jatropha Genome Database

JcCA0109411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0109411.10 + phase: 0 /partial
         (90 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038261001 assembled CDS                                       167   7e-43

>GSVIVT01038261001 assembled CDS
          Length = 181

 Score =  167 bits (424), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 81/90 (90%), Positives = 86/90 (95%)

Query: 1   VVARFNEIVTKHLLEGALETFKKYSVKEEDVDVVWVPGSFEIGIVAERLGKSGNYHAILC 60
           VVARFNEIVTK LLEGALETFK+YSVKEED+DVVWVPGSFEIG+VAERLGKS  Y AILC
Sbjct: 43  VVARFNEIVTKLLLEGALETFKRYSVKEEDIDVVWVPGSFEIGVVAERLGKSKKYQAILC 102

Query: 61  IGAVIRGDTTHYDAVANSAASGVLSAGINS 90
           IGAVIRGDT+HYDAVANSAASGVLSAG+NS
Sbjct: 103 IGAVIRGDTSHYDAVANSAASGVLSAGLNS 132