Jatropha Genome Database

JcCA0109021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0109021.10 + phase: 0 
         (122 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009832001 assembled CDS                                       162   3e-41
GSVIVT01024165001 assembled CDS                                       161   7e-41
GSVIVT01008858001 assembled CDS                                       161   7e-41
GSVIVT01010056001 assembled CDS                                        56   3e-09

>GSVIVT01009832001 assembled CDS
          Length = 164

 Score =  162 bits (410), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/120 (74%), Positives = 89/120 (74%)

Query: 3   TGFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 62
           T FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA
Sbjct: 2   TTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61

Query: 63  GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 122
           GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVR
Sbjct: 62  GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121


>GSVIVT01024165001 assembled CDS
          Length = 164

 Score =  161 bits (407), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 88/118 (74%)

Query: 5   FSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGV 64
           FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGV
Sbjct: 4   FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGV 63

Query: 65  LGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 122
           LGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVR
Sbjct: 64  LGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121


>GSVIVT01008858001 assembled CDS
          Length = 164

 Score =  161 bits (407), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 88/118 (74%)

Query: 5   FSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGV 64
           FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGV
Sbjct: 4   FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGV 63

Query: 65  LGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 122
           LGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVR
Sbjct: 64  LGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121


>GSVIVT01010056001 assembled CDS
          Length = 1277

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 1    MATGFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSI 56
            M+T FSGDE AP             S MG +YGT K+GVGVASMGVMR EL ++++
Sbjct: 949  MST-FSGDEMAPFFGFLDAATTLVFSYMGVSYGTTKNGVGVASMGVMRLELTVQTL 1003