Jatropha Genome Database

JcCA0103521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0103521.10 + phase: 0 
         (114 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030190001 assembled CDS                                        80   2e-16
GSVIVT01024563001 assembled CDS                                        73   2e-14
GSVIVT01021772001 assembled CDS                                        69   6e-13
GSVIVT01032682001 assembled CDS                                        62   4e-11
GSVIVT01006001001 assembled CDS                                        54   2e-08
GSVIVT01027088001 assembled CDS                                        53   2e-08
GSVIVT01010603001 assembled CDS                                        52   8e-08

>GSVIVT01030190001 assembled CDS
          Length = 139

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 20  MPGEAVDCGQVNSSLAPCIPFLTGADTAPSAACCGGVKNLKALAPTTADRRAACDCVKAA 79
           M  E + CG V + LAPCI +L  A   P  ACC GVKNLK  A TT DRR AC C+  A
Sbjct: 44  MAVEGLSCGDVATQLAPCINYLRSAGPLP-PACCNGVKNLKNSAATTQDRRTACKCLINA 102

Query: 80  ASHYPNINEDSASSLPKKCGVEVTIPISKNTNCQK 114
           +     +N   A+ LP KCGV +   IS +TNC +
Sbjct: 103 SKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQ 137


>GSVIVT01024563001 assembled CDS
          Length = 119

 Score = 73.2 bits (178), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 25  VDCGQVNSSLAPCIPFLTGADTAPSAACCGGVKNLKALAPTTADRRAACDCVKAAASHYP 84
           V C QV   L PC+ +L      PS+ CC GVK +KA + T  DRR AC C++  A+  P
Sbjct: 29  VTCSQVTQLLNPCVNYLIYGGAIPSS-CCAGVKQVKAASKTGEDRRTACSCIQDGAAMIP 87

Query: 85  NINEDSASSLPKKCGVEVTIPISKNTNCQK 114
            I+ +  +SLP +CGV +   IS +T+C +
Sbjct: 88  GIDYNLVASLPSQCGVSLPYKISPSTDCSR 117


>GSVIVT01021772001 assembled CDS
          Length = 129

 Score = 68.6 bits (166), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%)

Query: 22  GEAVDCGQVNSSLAPCIPFLTGADTAPSAACCGGVKNLKALAPTTADRRAACDCVKAAAS 81
           G  V CG V+   A C+ + TG    PS ACC G++ L A   T  D++  C C+K    
Sbjct: 23  GATVPCGTVDMKAAACVGYATGKQPKPSPACCSGLQQLAATVKTVDDKKNICRCLKNGVK 82

Query: 82  HYPNINEDSASSLPKKCGVEVTIPISKNTNCQ 113
            +  + +   S +P  C ++V  P+S NTNC+
Sbjct: 83  AFAGVQDRLLSQIPTACNIKVGFPVSLNTNCE 114


>GSVIVT01032682001 assembled CDS
          Length = 144

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 29  QVNSSLAPCIPFLTGADTAPSAACCGGVKNLKALAPTTADRRAACDCVKAAAS-HYPNIN 87
            +N  L PC  FL G    P  ACC GVK L A   T  DR+ AC C+KA+ + H P   
Sbjct: 56  HINRKLTPCRSFLLGQQNKPPPACCTGVKGLNAEYKTATDRQRACSCLKASFTKHQPAFR 115

Query: 88  EDSASSLPKKCGVEVTIPISKNTNCQK 114
              A  LP +C   +   I  N +C +
Sbjct: 116 LSFAQRLPGECNANIRNTIIANFDCSR 142


>GSVIVT01006001001 assembled CDS
          Length = 69

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 48  PSAACCGGVKNLKALAPTTADRRAACDCVKAAASHYPNINEDSASSLPKKCGVEVTIPIS 107
           P AACC G  NL + A T+AD++AAC+C+K AA    N N   A  LP  C + +   +S
Sbjct: 2   PPAACCTGASNLASSASTSADKKAACECIKTAAKKL-NPNPQLAKGLPGNCKISLPFTVS 60

Query: 108 KNTNCQK 114
            N +C K
Sbjct: 61  ANVDCSK 67


>GSVIVT01027088001 assembled CDS
          Length = 115

 Score = 53.1 bits (126), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 27  CGQVNSSLAPCIPFLTGADTA-PSAACCGGVKNLKALAPTTADRRAACDCVKAAASHYPN 85
           C +V   +APC+ F      A PS  CC GV  +  +A T  DR A C+C+K    +Y +
Sbjct: 24  CPRVIREVAPCLSFFQDDGPAKPSKRCCEGVTEVNGMAKTKKDRVAICECLKQTL-NYID 82

Query: 86  INEDSASSLPKKCGVEVTI-PISKNTNCQK 114
            +      L K+CG+ + + P  +NTNC +
Sbjct: 83  YDPKRIPLLGKQCGLTIDLPPTGQNTNCSQ 112


>GSVIVT01010603001 assembled CDS
          Length = 102

 Score = 51.6 bits (122), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 24  AVDCGQVNSSLAPCIPFLT-GA-DTAPSAACCGGVKNLKALAPTTADRRAACDCVKAAAS 81
           A+DC  V + ++ C  F+T GA D  P + CC  V  L ++A +  +RR+ C C+    +
Sbjct: 3   AIDCSTVTALVSACSTFITYGAPDPIPGSPCCDAVVGLNSIADSIDNRRSVCRCLMGLIA 62

Query: 82  HYPNINEDSASSLPKKCGVEVTIPISKNTNCQ 113
            Y N N  + ++LP  CG+ +   +  NT+C 
Sbjct: 63  TY-NPNATAIATLPGFCGISLGFNLDPNTDCN 93