Jatropha Genome Database

JcCA0101681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0101681.10 + phase: 1 /pseudo/partial
         (262 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037705001 assembled CDS                                       401   e-112

>GSVIVT01037705001 assembled CDS
          Length = 397

 Score =  401 bits (1031), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/234 (80%), Positives = 212/234 (90%)

Query: 22  IVEHQEALRTYNALEIFSQYDIIVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 81
           IVEH+EAL T NALEI S+YD+++DATDN PSRYMISDCCVVLGKPLVSGAALGLEGQLT
Sbjct: 96  IVEHKEALCTSNALEILSKYDLVIDATDNVPSRYMISDCCVVLGKPLVSGAALGLEGQLT 155

Query: 82  VYNYKGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKIASDIGEPLSG 141
           VYNYKGGPCYRCLFPTPPPTTACQRC+DSGVLGVVPGIIGCLQALEAIKIAS +GEPLSG
Sbjct: 156 VYNYKGGPCYRCLFPTPPPTTACQRCSDSGVLGVVPGIIGCLQALEAIKIASAVGEPLSG 215

Query: 142 RMLLLDALSARIRIVKIRSRSLNCEVCGETAAFNQKQFRDFDYEKFTQSPLSTAPPKLNL 201
           RMLL DALSARIRIVKIR R   CEVCGE A F Q++F+DFDYEKFT+SPLST P KLNL
Sbjct: 216 RMLLFDALSARIRIVKIRGRLSQCEVCGENATFTQQKFQDFDYEKFTRSPLSTTPLKLNL 275

Query: 202 LSAGSRITSKDFNEKIVKGEGHVLLDVRPAHHFKIVALPNALNIPLASLEAKVA 255
           L A SRITSK++N+++V GE HVL+DVRP+HHF IV+LP +LNIPL+SLE +++
Sbjct: 276 LPADSRITSKEYNDRLVNGEAHVLVDVRPSHHFNIVSLPKSLNIPLSSLETRMS 329