Jatropha Genome Database

JcCA0101091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0101091.10 - phase: 2 /partial
         (229 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036775001 assembled CDS                                       412   e-116
GSVIVT01036773001 assembled CDS                                       399   e-112
GSVIVT01025727001 assembled CDS                                       107   4e-24

>GSVIVT01036775001 assembled CDS
          Length = 349

 Score =  412 bits (1059), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/229 (88%), Positives = 221/229 (96%)

Query: 1   DPEFAKKLASLADVYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVANP 60
           DPEFAKKLASLAD+YVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAV+NP
Sbjct: 79  DPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNP 138

Query: 61  KKPFAAIVGGSKVSTKIGVIESLLEKVDILILGGGMIFTFYKAQGHSVGSSLVEEDKLDL 120
           K+PFAAIVGGSKVS+KIGVIESLL KVD+L+LGGGMIFTFYKAQG+ VGSSLVEEDKLDL
Sbjct: 139 KRPFAAIVGGSKVSSKIGVIESLLGKVDVLLLGGGMIFTFYKAQGYGVGSSLVEEDKLDL 198

Query: 121 ANTLMEKAKAKGVFLLLPTDVVIADKFAADANSKVVPASSIPDGWLGLDVGPDSIQTFCE 180
           A +L+EKAK+KGV LLLP DVVIADKFAADANSKVVPAS IPDGW+GLD+GPDSI+TF E
Sbjct: 199 ATSLLEKAKSKGVSLLLPADVVIADKFAADANSKVVPASCIPDGWMGLDIGPDSIKTFGE 258

Query: 181 ALDTTKTVIWNGPMGVFEFEKFAVGTEAIAKKLAELSGKGVTTIIGGGD 229
           +LDTTKT+IWNGPMGVFEF+KFA+GTEAIAKKLA+LS KGVTTIIGGGD
Sbjct: 259 SLDTTKTIIWNGPMGVFEFDKFALGTEAIAKKLADLSEKGVTTIIGGGD 307


>GSVIVT01036773001 assembled CDS
          Length = 405

 Score =  399 bits (1024), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/229 (86%), Positives = 217/229 (94%)

Query: 1   DPEFAKKLASLADVYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVANP 60
           +PEFAKKLAS+AD+YVNDAFGTAHRAHASTEGV K+LKPSVAGFL+QKELDYLVGAV++P
Sbjct: 130 EPEFAKKLASIADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSSP 189

Query: 61  KKPFAAIVGGSKVSTKIGVIESLLEKVDILILGGGMIFTFYKAQGHSVGSSLVEEDKLDL 120
           K+PFAAIVGGSKVS+KIGVIESLLEK DIL+LGGGMIFTFYKAQG SVGSSLVEEDKL L
Sbjct: 190 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLSL 249

Query: 121 ANTLMEKAKAKGVFLLLPTDVVIADKFAADANSKVVPASSIPDGWLGLDVGPDSIQTFCE 180
           A +L+EKAKAKGV LLLPTDVVIADKFA DANSK+VPAS+IPDGW+GLD+GPDSI+ F E
Sbjct: 250 ATSLLEKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSIKIFNE 309

Query: 181 ALDTTKTVIWNGPMGVFEFEKFAVGTEAIAKKLAELSGKGVTTIIGGGD 229
           AL+TTKTVIWNGPMGVFEF+KFA GT A+AKKLAELSGK VTTIIGGGD
Sbjct: 310 ALETTKTVIWNGPMGVFEFDKFAEGTVAVAKKLAELSGKDVTTIIGGGD 358


>GSVIVT01025727001 assembled CDS
          Length = 581

 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 4/227 (1%)

Query: 3   EFAKKLASLADVYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVANPKK 62
           +FA++L+S+ D++VND+F  +H+  AST GV ++    VAGF  ++ L  L  A    KK
Sbjct: 109 KFAEQLSSVVDIFVNDSFSNSHKILASTVGVPRFCSACVAGFHFEESLCQLKMAAQINKK 168

Query: 63  PFAAIVGGSKVSTKIGVIESLLEKVDILILGGGMIFTFYKAQGHSVGSSLVEEDKLDLAN 122
           P  AI+GG  +  K   +  L  + D L+  G M F    A G  V  +L+E   L  A+
Sbjct: 169 PCIAIIGGGNLFDKASAVRYLASRCDGLVFVGMMAFQIMHALGLHVPLNLLEGGPLKEAS 228

Query: 123 TLMEKAKAKGVFLLLPTDV-VIADKFAADANSKVVPASSIPDGWLGLDVGPDSIQTFCEA 181
            +++ A+ + + +L P D   + + F      ++ PA  I DGW+ +D GP ++      
Sbjct: 229 NIVQLAQNRKIPILYPKDFWCMTNDFPKQM--EIFPAYGILDGWIPVDPGPKALDEINSL 286

Query: 182 LDTTKTVIWNGPMGVFEFEKFAVGTEAIAKKLAELSGKGV-TTIIGG 227
           L   K +IW GP+      +   G   +   L  L+      T+IG 
Sbjct: 287 LTGCKKIIWIGPVKFRLPSQDIYGASKLVSMLDRLTQSNCEITVIGN 333