Jatropha Genome Database

JcCA0098341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0098341.10 + phase: 1 /pseudo/partial
         (121 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029247001 assembled CDS                                       152   3e-38
GSVIVT01035912001 assembled CDS                                       126   3e-30
GSVIVT01033422001 assembled CDS                                        52   5e-08

>GSVIVT01029247001 assembled CDS
          Length = 406

 Score =  152 bits (385), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 72/93 (77%), Positives = 84/93 (90%)

Query: 23  KDIPDIEGDKIFGIQSFTVRLGQERVFWICISLLEIAYGVAILVGAASSYTWSKCVTVVG 82
           KDIPDIEGD+IFGI+SF+VRLGQ+RVFWICI LL++AYG A+ VGA SS  WSK VTV+G
Sbjct: 302 KDIPDIEGDRIFGIRSFSVRLGQKRVFWICILLLQMAYGAAVSVGATSSCLWSKLVTVLG 361

Query: 83  HAILAAILWNRAKSVDLKSKAAITSCYMFIWKV 115
           HA+LA+ILW RAKSVDLKSKAAITS YMFIW++
Sbjct: 362 HAVLASILWTRAKSVDLKSKAAITSFYMFIWQL 394


>GSVIVT01035912001 assembled CDS
          Length = 398

 Score =  126 bits (316), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 78/98 (79%)

Query: 23  KDIPDIEGDKIFGIQSFTVRLGQERVFWICISLLEIAYGVAILVGAASSYTWSKCVTVVG 82
           KDIPD++GD+ FGIQSFTV+LGQ++VFW+C+++L +AYG A ++GA+SS    K  TV  
Sbjct: 269 KDIPDVDGDREFGIQSFTVKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFC 328

Query: 83  HAILAAILWNRAKSVDLKSKAAITSCYMFIWKVSQSLT 120
           H  LA +LW RA+SVDL SK A+TS YMFIWK S+S++
Sbjct: 329 HCALALVLWVRAQSVDLSSKEAVTSFYMFIWKASESIS 366


>GSVIVT01033422001 assembled CDS
          Length = 390

 Score = 52.4 bits (124), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 23  KDIPDIEGDKIFGIQSFTVRLGQERVFWICISLLEIAYGVAILVGAASSYTWSKCVTVVG 82
           KD+PD+EGD+ + I +   +LG   + ++   LL + Y  +IL        +   + +  
Sbjct: 285 KDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLLVNYIGSILAAIYMPQAFRLSLMIPA 344

Query: 83  HAILAAILWNRAKSVDLK--SKAAITSCYMFIWKV 115
           HAILAA L  +A+ ++    +K AI+  Y FIW +
Sbjct: 345 HAILAAGLIFQARVLEQANYTKEAISDFYRFIWNL 379