Jatropha Genome Database

JcCA0098081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0098081.10 - phase: 0 /partial
         (129 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021313001 assembled CDS                                        94   1e-20
GSVIVT01014092001 assembled CDS                                        75   6e-15

>GSVIVT01021313001 assembled CDS
          Length = 487

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 65/121 (53%), Gaps = 43/121 (35%)

Query: 4   RDEDIYTFFEPELPNEPPAKARCRSLDPVTSHLPKVPCSRSRSKAHLNKQRSMSTLERNK 63
           +DEDIYTFFEPELP+EP A AR + ++PV +   KV                        
Sbjct: 405 KDEDIYTFFEPELPSEPAAAARTKVVEPVKTSATKV------------------------ 440

Query: 64  VGTPAWRPIQHDRIKMHEGSSVLDLKAENYFSCAVSRKRSNARYLLGTSDDVVILLKELA 123
                              S++LDLK +NYFSCAV RKRS ARYLLG+ DDVV L+K+LA
Sbjct: 441 -------------------STILDLKGDNYFSCAVGRKRSKARYLLGSLDDVVTLIKDLA 481

Query: 124 D 124
           +
Sbjct: 482 E 482


>GSVIVT01014092001 assembled CDS
          Length = 880

 Score = 75.5 bits (184), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 41/122 (33%)

Query: 4   RDEDIYTFFEPELPNEPPAKARCRSLDPVTSHLPKVPCSRSRSKAHLNKQRSMSTLERNK 63
           +DED+YTFFEPELP++  + A+ R++D      P+                         
Sbjct: 796 KDEDVYTFFEPELPSDNISMAKSRAIDAFKRPSPE------------------------- 830

Query: 64  VGTPAWRPIQHDRIKMHEGSSVLDLKAENYFSCAVSRKRSNARYLLGTSDDVVILLKELA 123
               +W              +VLDLK ENYFSCAV R R+ AR+  G+SD+VV  LKELA
Sbjct: 831 --KTSW--------------NVLDLKGENYFSCAVGRTRTKARFTFGSSDEVVSFLKELA 874

Query: 124 DS 125
            +
Sbjct: 875 GA 876