Jatropha Genome Database

JcCA0091211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0091211.10 - phase: 0 /pseudo/partial
         (243 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001119001 assembled CDS                                       287   4e-78
GSVIVT01021426001 assembled CDS                                        94   5e-20
GSVIVT01001046001 assembled CDS                                        84   7e-17
GSVIVT01028118001 assembled CDS                                        74   5e-14
GSVIVT01024207001 assembled CDS                                        71   4e-13
GSVIVT01022631001 assembled CDS                                        70   6e-13
GSVIVT01025535001 assembled CDS                                        61   4e-10
GSVIVT01003253001 assembled CDS                                        53   1e-07

>GSVIVT01001119001 assembled CDS
          Length = 954

 Score =  287 bits (734), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 140/157 (89%), Positives = 146/157 (92%), Gaps = 7/157 (4%)

Query: 80  RNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKN 139
           RNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKN
Sbjct: 415 RNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKN 474

Query: 140 GFPVFATVIEANHVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHED 199
           GFPVFATV+EAN+VTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERI+KSIAPSIYGHED
Sbjct: 475 GFPVFATVVEANYVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIVKSIAPSIYGHED 534

Query: 200 IKTAIALAMFGGQEKNVRRXDTGSE---GTVNVLLMG 233
           IKTA+ALAMFGGQEKNV     G     G +NVLL+G
Sbjct: 535 IKTAMALAMFGGQEKNVE----GKHRLRGDINVLLLG 567


>GSVIVT01021426001 assembled CDS
          Length = 776

 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 3/154 (1%)

Query: 80  RNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKN 139
           +++Q L++QE P     G+LPR  +VI+ +DL+D  +PG+ + + GIY      S  + N
Sbjct: 190 KDHQTLSMQEVPENSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGIYKAIPGKSKGSVN 249

Query: 140 GFPVFATVIEANHVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHED 199
           G  VF TV+ AN+V+      +    T ED + I+ +A+     + +  S+APSIYGH  
Sbjct: 250 G--VFRTVLIANNVSLLNKEANTPIYTPEDLKHIKSIAERDDTLDLLGNSLAPSIYGHSW 307

Query: 200 IKTAIALAMFGGQEKNVRRXDTGSEGTVNVLLMG 233
           IK A+ L M GG EKN++   T   G +N++++G
Sbjct: 308 IKKAVILLMLGGVEKNLKN-GTHLRGDINMMMVG 340


>GSVIVT01001046001 assembled CDS
          Length = 732

 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 80/167 (47%), Gaps = 13/167 (7%)

Query: 81  NYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYT--NNFDLSLNTK 138
           + Q L LQE+P  VP G LPR   + +   L+    PG  + + GIY+     + S + K
Sbjct: 225 DQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIYQAANSSTSHK 284

Query: 139 NGFPVFATVI------EANHVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAP 192
               V    I      EAN    +         T ED EE +K A +    +RI   IAP
Sbjct: 285 GAVAVRQPYIRVVGIEEANEANSR----GPAAFTSEDMEEFKKFASEADAYKRICSKIAP 340

Query: 193 SIYGHEDIKTAIALAMFGGQEKNVRRXDTGSEGTVNVLLMGRSRHSK 239
           SIYGH+D+K A+A  +FGG  KN+        G +NVLL+G    +K
Sbjct: 341 SIYGHDDVKKAVACLLFGGSRKNLPD-GVKLRGDINVLLLGDPSTAK 386


>GSVIVT01028118001 assembled CDS
          Length = 718

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 1/152 (0%)

Query: 82  YQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGF 141
           +Q+  +QE    VP G +PR   V L  +L     PG+ +E++GI+              
Sbjct: 226 FQEAKIQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAG 285

Query: 142 PVFATVIEANHVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIK 201
            V  T +EA  VT  +  +  Y+L ++++E+I +LA+D  I  ++ +S+AP I+GHED+K
Sbjct: 286 LVADTYLEAMSVTHFKKKYEEYELRRDEEEQIARLAEDGDIYNKLARSLAPEIFGHEDVK 345

Query: 202 TAIALAMFGGQEKNVRRXDTGSEGTVNVLLMG 233
            A+ L + G   + ++       G +++ LMG
Sbjct: 346 KALLLLLVGAPHRKLKD-GMKIRGDLHICLMG 376


>GSVIVT01024207001 assembled CDS
          Length = 834

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 36/183 (19%)

Query: 81  NYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNG 140
           + Q + LQE+P  +P G  P    +++ + L+D  +PG+ +EVTGIY      +++ + G
Sbjct: 310 DKQIVRLQETPDDIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYR-----AMSVRVG 364

Query: 141 FPVFATVIEANHVTKKQDLFSAYKLTQEDKEEIE----------------------KLAK 178
                T I+  H+ KK D     ++  ED  E+E                      +L+K
Sbjct: 365 PTQRTTYIDCLHL-KKTD---KSRMQAEDPMEVENGSGRNEEDTLLGYEDKVAQLKELSK 420

Query: 179 DPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVRRXDTGSE--GTVNVLLMGRSR 236
            P I +R+ +S+AP+I+  +D+K  +   +FGG    +    +G+   G +N+LL+G   
Sbjct: 421 QPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKL---PSGASFRGDINILLVGDPG 477

Query: 237 HSK 239
            SK
Sbjct: 478 TSK 480


>GSVIVT01022631001 assembled CDS
          Length = 665

 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 8/158 (5%)

Query: 81  NYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNG 140
           +YQ++ +QES  ++  G +PR   VIL +DL+D  + G++I VTGI T  +  S + K+ 
Sbjct: 198 DYQEIKIQESVQVLGVGAIPRSIPVILQDDLVDIVKAGDDIIVTGILTAKW--SSDLKDV 255

Query: 141 FPVFATVIEANHVTKKQDLFSAYKLTQEDKEEIEKLAKD----PRIGER-IIKSIAPSIY 195
                 V+ ANHV +  +L S   +  E   + ++   D    P  G   I++ I P ++
Sbjct: 256 RCDLDPVLIANHVRRTNELRSDMDIPDEVIMKFKQFWSDFKDTPLKGRNAILRGICPQVF 315

Query: 196 GHEDIKTAIALAMFGGQEKNVRRXDTGSEGTVNVLLMG 233
           G   +K A+AL + GG + +V    T   G  ++LL+G
Sbjct: 316 GLFTVKLAVALTLIGGVQ-HVDASGTKVRGESHLLLVG 352


>GSVIVT01025535001 assembled CDS
          Length = 553

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 26/163 (15%)

Query: 97  GRLPRYKEVILLNDLIDCARPGEEIEVTGIY---TNNFDL----SLNTKNG-FPVFATVI 148
           GR+PR  E  L  DL+D   PG+ + VTGI     N  D+    S N   G F ++   +
Sbjct: 9   GRVPRTVECELTEDLVDACIPGDVVTVTGIIRQINNYMDIGGGKSKNKNQGLFYLYLEAV 68

Query: 149 ---------------EANHVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGE--RIIKSIA 191
                          ++N   +  +L   +  +  D E I K +++       +I++SI 
Sbjct: 69  SIKNSKSQYISEDLQDSNADARATELLDLFSFSPRDLEFIVKFSEEHGSDRFRQILQSIC 128

Query: 192 PSIYGHEDIKTAIALAMFGGQEK-NVRRXDTGSEGTVNVLLMG 233
           PSIYGHE +K  I LA+FGG +K +  +      G ++++++G
Sbjct: 129 PSIYGHELVKAGITLALFGGVQKYSTDKNKVPVRGDIHIIVVG 171


>GSVIVT01003253001 assembled CDS
          Length = 822

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 160 FSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVRRX 219
           F + ++ QE+ +EI+++   P    +++ SIAP+++GH+DIK AI L + GG  K     
Sbjct: 359 FFSCQVAQEELDEIQRMRNTPDFFNKLVDSIAPTVFGHQDIKRAILLMLLGGVHKCTHE- 417

Query: 220 DTGSEGTVNVLLMG 233
                G +NV ++G
Sbjct: 418 GINLRGDINVCIVG 431