Jatropha Genome Database
- JcCA0090671.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0090671.10 - phase: 0 /partial
(119 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01032166001 assembled CDS 178 5e-46
GSVIVT01034331001 assembled CDS 55 6e-09
GSVIVT01002544001 assembled CDS 54 1e-08
GSVIVT01035887001 assembled CDS 53 3e-08
GSVIVT01015415001 assembled CDS 51 1e-07
GSVIVT01017121001 assembled CDS 49 4e-07
GSVIVT01003702001 assembled CDS 49 5e-07
GSVIVT01000579001 assembled CDS 49 5e-07
GSVIVT01012771001 assembled CDS 48 1e-06
GSVIVT01012768001 assembled CDS 47 1e-06
GSVIVT01012770001 assembled CDS 47 1e-06
GSVIVT01017044001 assembled CDS 47 3e-06
GSVIVT01005091001 assembled CDS 46 4e-06
GSVIVT01031882001 assembled CDS 46 4e-06
GSVIVT01012769001 assembled CDS 45 5e-06
>GSVIVT01032166001 assembled CDS
Length = 475
Score = 178 bits (451), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 81/88 (92%), Positives = 87/88 (98%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGG 60
GHKKWITGISWEPVHL APCRRFVS+SKDGDARIWDVSLRKCVICL+GHTLA+TCVKWGG
Sbjct: 193 GHKKWITGISWEPVHLRAPCRRFVSSSKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 252
Query: 61 DGLIYTGSQDCTIKVWETTQGKLVRELK 88
DG+IYTGSQDCTIKVWET+QGKL+RELK
Sbjct: 253 DGVIYTGSQDCTIKVWETSQGKLIRELK 280
>GSVIVT01034331001 assembled CDS
Length = 989
Score = 55.1 bits (131), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 23 FVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGDG-LIYTGSQDCTIKVWETTQG 81
F S S D + +IWD+ + C+ GHT + +++ DG + +G +D T+K+W+ T G
Sbjct: 116 FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175
Query: 82 KLVRELK 88
KL+ + K
Sbjct: 176 KLLHDFK 182
>GSVIVT01002544001 assembled CDS
Length = 506
Score = 54.3 bits (129), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGG 60
GH+ T + + P F S S D + ++WD+ + C+ GHT I+ +++
Sbjct: 98 GHRSNCTAVEFHPFG-----EFFASGSLDTNLKVWDIRKKGCIHTYKGHTRGISTIRFTP 152
Query: 61 DG-LIYTGSQDCTIKVWETTQGKLVRELK 88
DG + +G D +KVW+ T GKL+ + K
Sbjct: 153 DGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
>GSVIVT01035887001 assembled CDS
Length = 676
Score = 52.8 bits (125), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGG 60
GH + + W H+N C + S D R+WDV +CV GH + +
Sbjct: 507 GHLSDVDCVQW---HIN--CNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMVLSLAMSP 561
Query: 61 DG-LIYTGSQDCTIKVWETTQGKLVRELKVILDTNWYQPFSC 101
DG + +G +D TI +W+ + G+ V L + W FSC
Sbjct: 562 DGQYMASGDEDGTIMMWDLSSGRCVMPLMGHMSCVWSLAFSC 603
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 23 FVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGD-GLIYTGSQDCTIKVWETTQG 81
F S+S D ARIW + + + + GH + CV+W + I TGS D T+++W+ G
Sbjct: 482 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHINCNYIATGSSDKTVRLWDVQSG 541
Query: 82 KLVR 85
+ VR
Sbjct: 542 ECVR 545
Score = 46.2 bits (108), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGG 60
GH+ + ++ P + S +DG +WD+S +CV+ L GH + + +
Sbjct: 549 GHRSMVLSLAMSP-----DGQYMASGDEDGTIMMWDLSSGRCVMPLMGHMSCVWSLAFSC 603
Query: 61 DG-LIYTGSQDCTIKVWE-TTQGKLVR 85
+G L+ +GS D T+K+W+ TT K+ R
Sbjct: 604 EGSLLASGSADSTVKLWDVTTSTKVPR 630
>GSVIVT01015415001 assembled CDS
Length = 908
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 23 FVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGD-GLIYTGSQDCTIKVWETTQG 81
++ S D A++WD + CV L GHT ++ V + + +I+TGS+D T+++W T
Sbjct: 204 LITGSDDQTAKVWDYQTKSCVQTLEGHTHNVSSVCFHPELPIIFTGSEDGTVRIWHATTY 263
Query: 82 KLVRELKVILDTNW 95
+L L L+ W
Sbjct: 264 RLENTLNYGLERVW 277
>GSVIVT01017121001 assembled CDS
Length = 933
Score = 49.3 bits (116), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 23 FVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGD-GLIYTGSQDCTIKVWETTQG 81
++ S D A++WD + CV L GHT ++ V + + +I TGS+D T+++W T
Sbjct: 227 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY 286
Query: 82 KLVRELKVILDTNW 95
+L L L+ W
Sbjct: 287 RLENTLNYGLERVW 300
>GSVIVT01003702001 assembled CDS
Length = 313
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWG- 59
GH + I+ +++ ++ R SAS D R+WDV + L GHT + CV +
Sbjct: 63 GHDQGISDLAF-----SSDSRHVCSASDDKTVRLWDVETGSLIKTLQGHTNHVFCVNFNP 117
Query: 60 GDGLIYTGSQDCTIKVWETTQGKLVRELKVILD 92
+I +GS D T++VW+ GK ++ L D
Sbjct: 118 QSNMIVSGSFDETVRVWDVKTGKCLKVLPAHSD 150
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 14 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGDG-LIYTGSQDCT 72
V+ N VS S D R+WDV KC+ L H+ +T + DG LI + S D
Sbjct: 113 VNFNPQSNMIVSGSFDETVRVWDVKTGKCLKVLPAHSDPVTAANFNRDGSLIVSSSYDGL 172
Query: 73 IKVWETTQGKLVREL 87
++W+ + G ++ L
Sbjct: 173 CRIWDASTGHCMKTL 187
>GSVIVT01000579001 assembled CDS
Length = 480
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 33 RIWDVSLRKCVICLTGHTLAITCVKWGGDGLIYTGSQDCTIKVWETTQGK 82
+IW S +C+ + H A+ V G+G+IYTGS DC IKVW G+
Sbjct: 280 KIWRASDLRCLESVKAHQDAVNAVAISGNGIIYTGSADCRIKVWAKASGE 329
>GSVIVT01012771001 assembled CDS
Length = 333
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKW-- 58
GH ++ +++ P N F SAS DG +IW++S L GH+ + C+ +
Sbjct: 153 GHAHYVMQVAFSPKDANT----FASASLDGTIKIWNLSSPAPDFTLDGHSKGVNCIDYFM 208
Query: 59 -GGDGLIYTGSQDCTIKVWETTQGKLVRELK 88
G + +GS D T KVW+ V+ L+
Sbjct: 209 RGSKPYLISGSDDHTAKVWDYEAKSCVQTLE 239
>GSVIVT01012768001 assembled CDS
Length = 322
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKW-- 58
GH ++ +++ P +N F SAS DG ++W++S L GH+ + C+ +
Sbjct: 142 GHAHYVMQVAFSPKDVNT----FASASLDGTIKVWNLSSPAPDFTLDGHSKGVNCIDYFM 197
Query: 59 -GGDGLIYTGSQDCTIKVWETTQGKLVRELK 88
G + +GS D T KVW+ V+ L+
Sbjct: 198 RGSKPYLISGSDDHTAKVWDYEAKSCVQTLE 228
>GSVIVT01012770001 assembled CDS
Length = 329
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKW-- 58
GH ++ +++ P N F SAS DG +IW++S L GH+ + C+ +
Sbjct: 145 GHAHYVMQVAFSPKDANT----FASASLDGTIKIWNLSSPAPDFTLDGHSKGVNCIDYFM 200
Query: 59 -GGDGLIYTGSQDCTIKVWETTQGKLVRELK 88
G + +GS D T KVW+ V+ L+
Sbjct: 201 RGSKPYLISGSDDHTAKVWDYEAKSCVQTLE 231
Score = 44.7 bits (104), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGG 60
GH K + I + + +S S D A++WD + CV L GHT ++ V
Sbjct: 188 GHSKGVNCIDY---FMRGSKPYLISGSDDHTAKVWDYEAKSCVQTLEGHTNNVSAVCVHS 244
Query: 61 D-GLIYTGSQDCTIKVWETTQGKLVRELKVILDTNWYQPFSCL 102
+ LI TGS+D + +W+ +L L + W F C+
Sbjct: 245 ELPLIITGSEDGNVHIWDGATYRLENTLNYGFERVW--AFGCM 285
>GSVIVT01017044001 assembled CDS
Length = 923
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 25 SASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGDGLIYTGSQDCTIKVW 76
SAS D ++W +S KC+ + HT + + DG++YT S D T++VW
Sbjct: 215 SASLDKTVKVWRISDHKCIETIQAHTDPVNAIVVADDGVLYTASDDATVRVW 266
>GSVIVT01005091001 assembled CDS
Length = 479
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 25 SASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGDGLIYTGSQDCTIKVWE 77
SAS D ++W +S KC+ + H A+ V G DGL++TGS D ++KVW
Sbjct: 197 SASWDKTIKVWRISDSKCLESVNVHDDAVNAVVAGFDGLVFTGSADGSVKVWR 249
>GSVIVT01031882001 assembled CDS
Length = 429
Score = 45.8 bits (107), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 25 SASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGDGLIYTGSQDCTIKVW 76
S S D ++W +S KC+ + H AI V G GL++TGS D T+KVW
Sbjct: 237 SGSWDKTLKVWRISDSKCLESIRAHDDAINAVVAGFAGLVFTGSADGTVKVW 288
>GSVIVT01012769001 assembled CDS
Length = 330
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 1 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKW-- 58
GH ++ +++ P F SAS DG ++W++S L GH+ + C+ +
Sbjct: 150 GHAHYVMQVAFSP----KDAHTFASASLDGTIKVWNLSSPAPDFTLDGHSKGVNCIDYFM 205
Query: 59 -GGDGLIYTGSQDCTIKVWETTQGKLVRELK 88
G + +GS D T KVW+ V+ L+
Sbjct: 206 RGSKPYLISGSDDHTAKVWDYQAKSCVQTLE 236