Jatropha Genome Database

JcCA0088981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0088981.10 + phase: 1 /pseudo/partial
         (118 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013850001 assembled CDS                                       122   3e-29
GSVIVT01026137001 assembled CDS                                        75   6e-15
GSVIVT01032675001 assembled CDS                                        55   9e-09
GSVIVT01024575001 assembled CDS                                        45   5e-06

>GSVIVT01013850001 assembled CDS
          Length = 306

 Score =  122 bits (307), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/109 (58%), Positives = 75/109 (68%), Gaps = 3/109 (2%)

Query: 13  KKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLVSWEAVSAR 72
           KKLVVVKSPNA+NPL+WD +PLLTIDVWEHAYYLDFQN RPDYIS F+EKLVSWEAVS+R
Sbjct: 198 KKLVVVKSPNAINPLLWDCNPLLTIDVWEHAYYLDFQNHRPDYISIFMEKLVSWEAVSSR 257

Query: 73  LXXXXXX-XXXXXXXXXXXXXXXXXSVPGSEAAELYV--DSESEDSEAE 118
           L                         +P SEA ++Y+  D + +DSEAE
Sbjct: 258 LEMAKAQVANREREEERRKRAEEEEQMPYSEAVKMYLESDGDGDDSEAE 306


>GSVIVT01026137001 assembled CDS
          Length = 321

 Score = 75.1 bits (183), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 46/62 (74%), Gaps = 2/62 (3%)

Query: 5   ILARQKRTKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLV 64
           +L R +R   L VVK+ NA+NP+VWD  P++++DVWEHAYYLD++N +  Y + F+  LV
Sbjct: 238 VLKRNERC--LAVVKTSNAINPIVWDDIPIISLDVWEHAYYLDYKNDKGKYATVFMNHLV 295

Query: 65  SW 66
           SW
Sbjct: 296 SW 297


>GSVIVT01032675001 assembled CDS
          Length = 154

 Score = 54.7 bits (130), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 6   LARQKRTKKLVVVKSPNAVNPLVW---DYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEK 62
           L   K  KKLVV  + N  +PLV    +  PLL IDVWEHAYYL ++N RPDY+   + K
Sbjct: 81  LGLDKDLKKLVVETTANQ-DPLVTKGPNLVPLLGIDVWEHAYYLQYKNVRPDYLKN-VWK 138

Query: 63  LVSWEAVS 70
           ++ W+  S
Sbjct: 139 VIDWKYAS 146


>GSVIVT01024575001 assembled CDS
          Length = 228

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 9/55 (16%)

Query: 16  VVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLVSWEAVS 70
           +V K PN V        PLL IDVWEHAY L ++N + DY+   I K+++W+  S
Sbjct: 175 LVTKGPNLV--------PLLGIDVWEHAYNLQYKNVKADYLKN-IWKVMNWKYAS 220