Jatropha Genome Database
- JcCA0088501.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0088501.10 + phase: 2 /partial
(96 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01024318001 assembled CDS 128 5e-31
GSVIVT01036862001 assembled CDS 113 2e-26
GSVIVT01038080001 assembled CDS 88 9e-19
GSVIVT01021507001 assembled CDS 83 3e-17
GSVIVT01032103001 assembled CDS 78 7e-16
GSVIVT01032110001 assembled CDS 77 1e-15
GSVIVT01035633001 assembled CDS 63 3e-11
GSVIVT01035636001 assembled CDS 60 2e-10
GSVIVT01035632001 assembled CDS 60 2e-10
GSVIVT01029057001 assembled CDS 55 7e-09
GSVIVT01035626001 assembled CDS 47 1e-06
>GSVIVT01024318001 assembled CDS
Length = 562
Score = 128 bits (322), Expect = 5e-31, Method: Composition-based stats.
Identities = 58/91 (63%), Positives = 75/91 (82%), Gaps = 3/91 (3%)
Query: 6 ECTVAARIYGERCYGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMDAKSPN 65
EC V+ R+YG C+GGEP FVA+ + +EEDDGY+VSYVHDE +G S+F+VMDAKS
Sbjct: 475 ECEVSRRLYGAGCFGGEPLFVAK---DGASEEDDGYIVSYVHDEKSGASRFVVMDAKSQT 531
Query: 66 LDIVAAVKLPRRVPYGFHGLFVXESDLKKLY 96
LD+VAAVKLPRRVPYGFHGLFV + D+++++
Sbjct: 532 LDVVAAVKLPRRVPYGFHGLFVKDGDIREIH 562
>GSVIVT01036862001 assembled CDS
Length = 915
Score = 113 bits (282), Expect = 2e-26, Method: Composition-based stats.
Identities = 51/63 (80%), Positives = 58/63 (92%)
Query: 29 QPENPEAEEDDGYLVSYVHDEINGESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFVX 88
+P+NPEAEEDDGY+VSYVHDE +GESKFLVMDAK+PNLDIVAAV+LPRRVPYGFHGL
Sbjct: 846 EPDNPEAEEDDGYIVSYVHDEKSGESKFLVMDAKTPNLDIVAAVRLPRRVPYGFHGLLYS 905
Query: 89 ESD 91
+ D
Sbjct: 906 KKD 908
>GSVIVT01038080001 assembled CDS
Length = 474
Score = 87.8 bits (216), Expect = 9e-19, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 62/94 (65%), Gaps = 4/94 (4%)
Query: 1 KGDRRECTVAARIYGERCYGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMD 60
K D V+ IYGE+ YGGEP F+ R P + EDDGY++++VHDE +S+ +++
Sbjct: 383 KVDLSTGQVSKYIYGEQRYGGEPLFLPRDPNS--GREDDGYILAFVHDEKTWKSELQIVN 440
Query: 61 AKSPNLDIVAAVKLPRRVPYGFHGLFVXESDLKK 94
A NL + A+VKLP RVPYGFHG F+ +L+K
Sbjct: 441 AT--NLQLEASVKLPSRVPYGFHGTFISSKELEK 472
>GSVIVT01021507001 assembled CDS
Length = 473
Score = 82.8 bits (203), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 55/79 (69%), Gaps = 4/79 (5%)
Query: 14 YGERCYGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMDAKSPNLDIVAAVK 73
YG++ YGGEP+FV + P + EDDGY++++VHDE +S+ +++A NL + A VK
Sbjct: 395 YGDQRYGGEPYFVHKDPTS--EREDDGYILAFVHDEKTWKSELHIVNAM--NLQLEATVK 450
Query: 74 LPRRVPYGFHGLFVXESDL 92
LP RVPYGFHG FV DL
Sbjct: 451 LPSRVPYGFHGTFVNSEDL 469
>GSVIVT01032103001 assembled CDS
Length = 546
Score = 78.2 bits (191), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 19 YGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMDAKSPNLDIVAAVKLPRRV 78
+G E FV R+P +EEDDGYL+ ++HDE G+S V+DAK+ + D +A V+LP RV
Sbjct: 468 FGSEAVFVPREP-GITSEEDDGYLIFFIHDEKTGKSYVNVIDAKTMSPDPIAIVELPNRV 526
Query: 79 PYGFHGLFVXESDLKK 94
PYGFH FV E LK+
Sbjct: 527 PYGFHAFFVTEEQLKE 542
>GSVIVT01032110001 assembled CDS
Length = 483
Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 19 YGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMDAKSPNLDIVAAVKLPRRV 78
+G E FV R+P +EEDDGYL+ +VHDE G+S V++AK+ + D VA V+LP RV
Sbjct: 405 FGSEAVFVPREP-GITSEEDDGYLIFFVHDEKTGKSYVNVINAKTMSPDPVAIVELPNRV 463
Query: 79 PYGFHGLFVXESDLKK 94
PYGFH FV E LK+
Sbjct: 464 PYGFHAFFVTEEQLKE 479
>GSVIVT01035633001 assembled CDS
Length = 1054
Score = 63.2 bits (152), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 30 PENPEAEEDDGYLVSYVHDEINGESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFV 87
P+ EEDDG+++S+VH+E S+ ++DA+ + VA + LP+RVPYGFHG F+
Sbjct: 991 PKQGGVEEDDGWIISFVHNEDTNISQVHIIDARKFDSKPVAKITLPQRVPYGFHGTFI 1048
>GSVIVT01035636001 assembled CDS
Length = 567
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 41/58 (70%)
Query: 30 PENPEAEEDDGYLVSYVHDEINGESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFV 87
P+ +EEDD ++VS+VH+E S+ ++DA+ + +A + LP+RVPYGFHG+F+
Sbjct: 504 PKGGSSEEDDSWIVSFVHNEDTDVSQVHIIDAQKFSSKPIAKITLPQRVPYGFHGIFI 561
>GSVIVT01035632001 assembled CDS
Length = 556
Score = 59.7 bits (143), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 37 EDDGYLVSYVHDEINGESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFV 87
EDDG++VS+VH E S+ ++DA N + +A + LP+RVPYGFHG F+
Sbjct: 500 EDDGWIVSFVHIENTDVSQVHIIDASKFNCEPIAKITLPQRVPYGFHGTFI 550
>GSVIVT01029057001 assembled CDS
Length = 554
Score = 55.1 bits (131), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 9 VAARIYGERCYGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMDAKSPNLDI 68
V +YGE +GGE FV + +L+S V DE S+ +V++A ++
Sbjct: 471 VTKMMYGEGRFGGEACFVGEEEGGEGEG----WLMSIVRDEKRERSELIVVEAD--DIKQ 524
Query: 69 VAAVKLPRRVPYGFHGLFVXESDLK 93
VA+V+LP RVPYGFHG FV L+
Sbjct: 525 VASVRLPTRVPYGFHGTFVDSQQLR 549
>GSVIVT01035626001 assembled CDS
Length = 563
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 10 AARIYGERCYGGEPFFVARQPENPEA-EEDDGYLVSYVHDEINGESKFLVMDAKSPNLDI 68
A + E EP FVAR P A EEDDG ++S V D+ NGE L++D ++ +
Sbjct: 489 AKNWFDEGSVPSEPLFVAR----PGATEEDDGVVISMVSDK-NGEGYALLLDGRT--FEE 541
Query: 69 VAAVKLPRRVPYGFHGLFV 87
+A K P +PYG HG +V
Sbjct: 542 IARGKFPYGLPYGLHGCWV 560