Jatropha Genome Database

JcCA0081341.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081341.40 + phase: 0 
         (156 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033843001 assembled CDS                                       260   2e-70

>GSVIVT01033843001 assembled CDS
          Length = 157

 Score =  260 bits (664), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/154 (82%), Positives = 139/154 (90%)

Query: 2   NNNSSSCEQKLQPRKLEISDKSKGFVELLQQLTICDSVSDEEFEKRFQEISTYGDDHLIC 61
           NNNSS  +QK Q RKLE+SDKSKGF+ELLQQL+ CDSVSD+EFE+RFQE+S+ GDDH+IC
Sbjct: 3   NNNSSGNDQKFQVRKLEVSDKSKGFIELLQQLSECDSVSDKEFEERFQELSSLGDDHVIC 62

Query: 62  VVEDDHTGKIIATGSVFIEKKFIRNCGKVGHIEDIVVDSNARGRHLGKKIVEFLTDHAHS 121
           V+EDD  GKIIATGSVFIEKKFIRNCGKVGHIEDIVVDSNARG  LGKKI+ FLT+HA S
Sbjct: 63  VIEDDQLGKIIATGSVFIEKKFIRNCGKVGHIEDIVVDSNARGLQLGKKILGFLTEHARS 122

Query: 122 VGCYKVILDCSIENKPFYEKCGFKQKEIQMVKYF 155
            GCYKVILDCS ENK FYEKCGFKQKEIQMVKYF
Sbjct: 123 KGCYKVILDCSAENKGFYEKCGFKQKEIQMVKYF 156