Jatropha Genome Database

JcCA0081341.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081341.30 - phase: 0 
         (156 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033842001 assembled CDS                                       196   5e-51
GSVIVT01022247001 assembled CDS                                        67   3e-12
GSVIVT01033834001 assembled CDS                                        67   4e-12

>GSVIVT01033842001 assembled CDS
          Length = 154

 Score =  196 bits (497), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 98/156 (62%), Positives = 116/156 (74%), Gaps = 2/156 (1%)

Query: 1   MSRSSLIHRITPFFISRIRQNHRXXXXXXXXXXXXXXXXXXXXDDAIHLTDNCVRRMKEL 60
           MSRS ++ R+  F  +RIRQN                      D AI +TDNCV+R+KEL
Sbjct: 1   MSRS-VLRRLHTFIAARIRQNQALLLTTSALHHSPSPSQSPSLD-AIQMTDNCVQRIKEL 58

Query: 61  QASEGSADEKLLRLGVETGGCSGFQYVFDLDNKINLDDRVFEREGIKLVVDNISYDFVKG 120
           Q +E S  +K+LRL VETGGCSGFQYVF LD+K N DDR+FER+G+KLVVD ISYDFVKG
Sbjct: 59  QTNEASMKDKMLRLSVETGGCSGFQYVFLLDDKTNSDDRIFERDGVKLVVDKISYDFVKG 118

Query: 121 ATIDYVEELIRSAFVVTINPSAVGGCSCKSSFMVKQ 156
           AT+DYVEELIRSAF+V+ NPSAVGGCSCKSSFMVK+
Sbjct: 119 ATVDYVEELIRSAFLVSTNPSAVGGCSCKSSFMVKE 154


>GSVIVT01022247001 assembled CDS
          Length = 150

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 5/112 (4%)

Query: 46  AIHLTDNCVRRMKELQASEGSADEKLLRLGVETGGCSGFQYVFDLDN--KINLDDRVFER 103
           AI LTDN ++ + ++++     ++  LR+GV+ GGCSG  Y  + ++  K   DD + E 
Sbjct: 41  AISLTDNALKHLNKMRSDR--TEDLCLRIGVKQGGCSGMSYTMEFEDRAKTRPDDSIIEY 98

Query: 104 EGIKLVVDNISYDFVKGATIDYVEELIRSAFVVTINPSAVGGCSCKSSFMVK 155
            G  +V D  S  FV G  +D+ + LI   F    NP+A   C C  SF  +
Sbjct: 99  NGFVIVCDPKSLLFVFGMQLDFSDALIGGGFSFK-NPNATQTCGCGKSFAAE 149


>GSVIVT01033834001 assembled CDS
          Length = 133

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 4/109 (3%)

Query: 46  AIHLTDNCVRRMKELQASEGSADEKLLRLGVETGGCSGFQYVFDLDNKINLDDRVFEREG 105
           A+ LTD    R++ L           LRLGV+  GC+G  Y  +  +     D + E +G
Sbjct: 21  ALTLTDAAASRIRHLLQQR---QRTFLRLGVKARGCNGLSYTLNYADDKGKFDELVEDKG 77

Query: 106 IKLVVDNISYDFVKGATIDYVEELIRSAFVVTINPSAVGGCSCKSSFMV 154
           +K+++D  +   V G  +D+V++ +RS F+  INP++ G C C  SFM 
Sbjct: 78  VKILIDPKALMHVIGTKMDFVDDKLRSEFIF-INPNSKGQCGCGESFMT 125