Jatropha Genome Database

JcCA0081161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081161.20 - phase: 0 
         (367 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023624001 assembled CDS                                       409   e-114

>GSVIVT01023624001 assembled CDS
          Length = 358

 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/365 (60%), Positives = 250/365 (68%), Gaps = 60/365 (16%)

Query: 3   AICFLSPVKPITFSSSVHSKRSPL----FRCNFSLPTITTTEPEPVYTSVRSFAPATVAN 58
           AICF SP KP   S S +  R  L    FRCNFS     T +P+PV+TSV+SFAPATVAN
Sbjct: 47  AICFHSPSKPTCISPSSNHYRPNLHARSFRCNFS--KTLTADPQPVFTSVKSFAPATVAN 104

Query: 59  LGPGFDFLGCAVDGLGDFVSVRIDPSVHPGEISISDITGNHACKKLSKDPLRNCAGISAI 118
           LGPGFD           F+   +D                                    
Sbjct: 105 LGPGFD-----------FLGAAVD------------------------------------ 117

Query: 119 ATMKMLNIRSVGLSLTLEKGLPXXXXXXXXXXXXXXXXXXXNEIFGGKLEVKDLILAGLE 178
                  +RSVGLSL+LEKGLP                   NEIFG KL V DL+LAGL+
Sbjct: 118 -------VRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEIFGRKLGVDDLVLAGLD 170

Query: 179 SEAKVSGYHADNIAPAIMGGFVLINSYDPLELMSLKFPGEKELFFVLVTPEFEAPTKKMR 238
           SEAKVSGYHADN+APA+MGGFVLI SYDPLEL+ L FP +KELFFVLV PEFEAPTKKMR
Sbjct: 171 SEAKVSGYHADNVAPALMGGFVLIRSYDPLELIPLTFPSDKELFFVLVNPEFEAPTKKMR 230

Query: 239 AALPEEIGMPHHVWNCSQAGALVASVLQGDLMGLGKALSNDKIVEPKRAPLIPGMEEVKK 298
           AALP EIGM  HVWNCSQA ALVAS+LQGDL GLGKALS+D+IVEP+RAPLIPGME VKK
Sbjct: 231 AALPSEIGMSDHVWNCSQAAALVASILQGDLRGLGKALSSDRIVEPRRAPLIPGMEGVKK 290

Query: 299 AAIRAGAFGCTISGAGPTAVAVIDNEERGKEIGERMVEAFLKEGNLKAVSLVKRLDRVGA 358
           AA+ AGAFGCTISGAGPTAVA+ D+EE+G+EIGERMVEAFL+EG LKAV++VK+LDRVGA
Sbjct: 291 AALEAGAFGCTISGAGPTAVAITDDEEKGREIGERMVEAFLEEGKLKAVAMVKQLDRVGA 350

Query: 359 RLIGS 363
           RL+ S
Sbjct: 351 RLMSS 355