Jatropha Genome Database

JcCA0081131.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081131.40 - phase: 0 
         (360 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008737001 assembled CDS                                       289   1e-78
GSVIVT01032155001 assembled CDS                                       269   2e-72
GSVIVT01033285001 assembled CDS                                       245   2e-65
GSVIVT01023969001 assembled CDS                                       173   9e-44
GSVIVT01024322001 assembled CDS                                        81   9e-16
GSVIVT01008429001 assembled CDS                                        68   7e-12
GSVIVT01011715001 assembled CDS                                        66   3e-11
GSVIVT01011713001 assembled CDS                                        63   2e-10

>GSVIVT01008737001 assembled CDS
          Length = 281

 Score =  289 bits (740), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 137/153 (89%), Positives = 143/153 (93%), Gaps = 5/153 (3%)

Query: 63  EIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSVPGKSHRDATRLHEEMAVDLIDVK 122
           EIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSP+VPGKSHRDATRLHEEMAVDLIDVK
Sbjct: 67  EIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPAVPGKSHRDATRLHEEMAVDLIDVK 126

Query: 123 PGERILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF 182
           PG+RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHN+KAGLDSLCEVVCGNF
Sbjct: 127 PGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNRKAGLDSLCEVVCGNF 186

Query: 183 LEMPFPDNSFDGAYSIEAT-----CHAPKLEEV 210
           L+MPF DNSFDGAYSIEAT     CH+   E +
Sbjct: 187 LQMPFADNSFDGAYSIEATSRTRGCHSRHRERI 219



 Score =  118 bits (295), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 52/60 (86%), Positives = 58/60 (96%)

Query: 297 RIAYWRNHILVTILAALGIAPKGTVDVHEMLFKTADHLTQGGETGIFSPMHMVLCRKPES 356
           RIAYWRNHIL+ I AALGIAPKGTVDVHEMLFKTAD+LT+GGE+GIF+PMHM+LCRKPES
Sbjct: 218 RIAYWRNHILIMIFAALGIAPKGTVDVHEMLFKTADYLTRGGESGIFTPMHMILCRKPES 277


>GSVIVT01032155001 assembled CDS
          Length = 421

 Score =  269 bits (687), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 140/345 (40%), Positives = 199/345 (57%), Gaps = 15/345 (4%)

Query: 27  AEQKGKRAVDLS---GGSISAEKVQDNYKQYWSFF--RRPKEIETAEKVPDFVDTFYNLV 81
           AE     A+DL+   GG I  ++V    ++Y  +      +E E      D V+ +Y+LV
Sbjct: 67  AEMSKAGALDLASGVGGKIQKDEVLSAVEKYEKYHVCYGGEEEERKANYSDMVNKYYDLV 126

Query: 82  TDIYEWGWGQSFHFSPSVPGKSHRDATRLHEEMAVDLIDVKPGERILDVGCGVGGPMRAI 141
           T  YE+GWG+SFHF+P   G+S R++ R HE      + VKPG+++LDVGCG+GGP+R I
Sbjct: 127 TSFYEFGWGESFHFAPRWKGESLRESIRRHEHFLALQLGVKPGQKVLDVGCGIGGPLREI 186

Query: 142 AAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLEMPFPDNSFDGAYSIEAT 201
           A  S  +V G+  NEYQ+ R R  N  AG+D  C+ V  +F++MPF DN+FD  Y+IEAT
Sbjct: 187 ARFSSTSVTGLNNNEYQITRGRELNCIAGVDKTCDFVKADFMKMPFSDNTFDAVYAIEAT 246

Query: 202 CHAPKLEEVYAEIFRVLKPGSLYVSYEWVTTDKYRASDPQHVEIIQGIERGDALPGLRSY 261
           CHAP     Y EI+RVLKPG  + +YEW  TD +  ++ +H +I   IE GD LP +R  
Sbjct: 247 CHAPDALGCYKEIYRVLKPGQCFAAYEWCMTDAFDPNNQEHQKIKAEIEIGDGLPDIRLT 306

Query: 262 ADIAETARKVGFEVVKEKDLAKPPAQPWW----------TRLKMGRIAYWRNHILVTILA 311
               E  ++ GFEV+ EKDLA     PW+          +  ++  +  +    +V  L 
Sbjct: 307 RQCLEALKQAGFEVIWEKDLAVGSPLPWYLPLDKSHFSLSSFRLTAVGRFITKNMVKALE 366

Query: 312 ALGIAPKGTVDVHEMLFKTADHLTQGGETGIFSPMHMVLCRKPES 356
            +G+APKG+  V   L K A+ L  GG+  IF+PM+  L RKP S
Sbjct: 367 FVGLAPKGSQRVQAFLEKAAEGLVDGGKKEIFTPMYFFLARKPNS 411


>GSVIVT01033285001 assembled CDS
          Length = 343

 Score =  245 bits (626), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 189/338 (55%), Gaps = 15/338 (4%)

Query: 34  AVDLS---GGSISAEKVQDNYKQYWSFF--RRPKEIETAEKVPDFVDTFYNLVTDIYEWG 88
           A+DL+   GG I   +V    ++Y  +       E E      D V+ +Y+L T  YE+G
Sbjct: 6   ALDLASGVGGKIEKNEVLSAVQKYEKYHVCHGGDEEERRANYTDMVNKYYDLATSFYEYG 65

Query: 89  WGQSFHFSPSVPGKSHRDATRLHEEMAVDLIDVKPGERILDVGCGVGGPMRAIAAHSRAN 148
           WG+SFHF+    G+S R++ + HE      + +K G+++LDVGCG+GGP+R IA  S  +
Sbjct: 66  WGESFHFASRWKGESLRESIKRHEHFLAVQLGLKCGQKVLDVGCGIGGPLREIARFSDTS 125

Query: 149 VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLEMPFPDNSFDGAYSIEATCHAPKLE 208
           + G+  NEYQ+ R +  N+ AG+D  C     +F++MPF +++FD  ++IEATCHAP + 
Sbjct: 126 ITGLNNNEYQITRGKELNRLAGVDKTCNFELADFMKMPFSNDTFDAVFAIEATCHAPDVL 185

Query: 209 EVYAEIFRVLKPGSLYVSYEWVTTDKYRASDPQHVEIIQGIERGDALPGLRSYADIAETA 268
           + Y EI+RVLKPG  + +YEW  TD +   + +H  I   +E G+ LP +RS     E  
Sbjct: 186 DCYKEIYRVLKPGQCFAAYEWCITDCFDPMNREHQRIKGEVELGNGLPDIRSVGQCLEAL 245

Query: 269 RKVGFEVVKEKDLAKPPAQPWW----------TRLKMGRIAYWRNHILVTILAALGIAPK 318
           +  GFEV+ EKD+A     PW+          +  +      +    +V  L  + +AP+
Sbjct: 246 KLAGFEVLWEKDVAADSPLPWYLPLDTTQFSLSNFRTTSFGRFITRNMVKALEFVRLAPE 305

Query: 319 GTVDVHEMLFKTADHLTQGGETGIFSPMHMVLCRKPES 356
           G+  V   L K A+ L +GG  GIF+PM+  + RKP S
Sbjct: 306 GSQRVQAFLEKAAEALVEGGREGIFTPMYFFVARKPRS 343


>GSVIVT01023969001 assembled CDS
          Length = 183

 Score =  173 bits (439), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 81/87 (93%), Positives = 84/87 (96%)

Query: 143 AHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLEMPFPDNSFDGAYSIEATC 202
           AHS ANVVGITINEYQVNRA LHNKKAGL+S CEVVCGNFLEMPFPDNSFDGAYSIEATC
Sbjct: 73  AHSGANVVGITINEYQVNRAHLHNKKAGLESQCEVVCGNFLEMPFPDNSFDGAYSIEATC 132

Query: 203 HAPKLEEVYAEIFRVLKPGSLYVSYEW 229
           HAPKLEEVY+EIFRVLKPGS+YVSYEW
Sbjct: 133 HAPKLEEVYSEIFRVLKPGSMYVSYEW 159



 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 52/62 (83%), Gaps = 1/62 (1%)

Query: 1  MDSLALVCTGALLAGGLYWFVCILGPAEQKGKRAVDLSGGSISAEKVQDNYKQYW-SFFR 59
          MDSLAL CT +L+AGG+YWFV +LG AE+KGKRAV LSGGSIS +KV+DNYKQY  S  R
Sbjct: 1  MDSLALFCTASLVAGGVYWFVFLLGAAERKGKRAVHLSGGSISGDKVRDNYKQYCRSTSR 60

Query: 60 RP 61
          RP
Sbjct: 61 RP 62


>GSVIVT01024322001 assembled CDS
          Length = 263

 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 16/234 (6%)

Query: 125 ERILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLE 184
           +R++DVGCG+GG  R +A    A+  GIT++  Q  RA+      GL         + L+
Sbjct: 43  KRVVDVGCGIGGSSRYLAKKYGASCQGITLSPLQAQRAQTLAASQGLADKVSFQVADALD 102

Query: 185 MPFPDNSFDGAYSIEATCHAPKLEEVYAEIFRVLKPGSLYVSYEWVTTDKYRASD---PQ 241
            PFPD  FD  +S+E+  H P  ++  +E+ RV+ PG   +   W   D   + +   P+
Sbjct: 103 QPFPDGQFDLVWSMESGEHMPDKKKFVSELARVVAPGGTIILVTWCHRDLSPSEESLKPE 162

Query: 242 HVEIIQGIERGDALPGLRSYADIAETARKVGFEVVKEKDLAKPPAQPWWTRLKMGRIAYW 301
              ++  I     LP   S  D  +    +  + +K  D ++  A P+W  +    + + 
Sbjct: 163 EKALLDKICSAYYLPDWCSTTDYVKLLESLSLQDIKAADWSEYVA-PFWPAVIRSALTF- 220

Query: 302 RNHILVTILAALGIAPKGTVDVHEMLFKTADHLTQGGETGIFSPMHMVLCRKPE 355
                +++L +     +G + +  M+        +G + G+     ++ CRKPE
Sbjct: 221 --KGFISLLRSGWKTIRGALVMPLMI--------RGYKMGLIK-FAIITCRKPE 263


>GSVIVT01008429001 assembled CDS
          Length = 491

 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 119 IDVKPGERILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 178
           +D+KPG+++LDVGCG+GG    +A +    VVGI ++   V+ A    +  GL    E  
Sbjct: 278 LDLKPGQKVLDVGCGIGGGDFYMAENFDVEVVGIDLSINMVSFAL--ERAIGLKCSVEFE 335

Query: 179 CGNFLEMPFPDNSFDGAYSIEATCHAPKLEEVYAEIFRVLKPGSLYVSYEWVTTDKYRAS 238
             +  +  +PDN+FD  YS +   H      ++   F+ LKPG      + + +D  + +
Sbjct: 336 VADCTKKSYPDNTFDVIYSRDTILHIQDKPALFKSFFKWLKPGG-----KVLISDYCKRA 390

Query: 239 DPQHVEIIQGI-ERGDALPGLRSYADIAETARKVGF-EVVKE 278
            P   E  + I +RG  L  + +Y    E  R  GF EV+ E
Sbjct: 391 GPPSSEFSEYIKQRGYDLHDVEAY---GEMLRDAGFIEVIAE 429


>GSVIVT01011715001 assembled CDS
          Length = 475

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 14/166 (8%)

Query: 116 VDLIDVKPGERILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA-GLDSL 174
           V  +D+KP +++LDVGCG+GG    +A      VVGI ++   +N   +  ++A G   L
Sbjct: 259 VTKLDLKPSQKVLDVGCGIGGGDFYMAEDFDVEVVGIDLS---INMISIALERAIGRKCL 315

Query: 175 CEVVCGNFLEMPFPDNSFDGAYSIEATCHAPKLEEVYAEIFRVLKPGSLYVSYEWVTTDK 234
            E    +  +  +PDN+FD  YS +   H      ++   F+ LKPG      + + TD 
Sbjct: 316 VEFEVADCTKKTYPDNTFDVIYSRDTILHIQDKPALFKSFFKWLKPGG-----KVLITDY 370

Query: 235 YRASDPQHVEIIQGIE-RGDALPGLRSYADIAETARKVGF-EVVKE 278
            + + P   E  + IE RG  L  +++Y  + + A   GF EV+ E
Sbjct: 371 CKRAGPPSPEFQEYIEQRGYDLHDVKAYGQMLKDA---GFCEVIAE 413


>GSVIVT01011713001 assembled CDS
          Length = 484

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 11/163 (6%)

Query: 119 IDVKPGERILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 178
           +++KPG+++LDVGCG+GG    +A      VVGI ++   ++ A   ++  G + L E  
Sbjct: 269 LELKPGQKVLDVGCGIGGGDFYMAEDFNVEVVGIDLSINMISIAL--DRAIGRNRLVEFE 326

Query: 179 CGNFLEMPFPDNSFDGAYSIEATCHAPKLEEVYAEIFRVLKPGSLYVSYEWVTTDKYRAS 238
             +  +  +PD++FD  YS +   H      ++   F+ LKPG      + + +D  + S
Sbjct: 327 VADCTKKTYPDSTFDVIYSRDTILHIQDKPALFRSFFKWLKPGG-----KVLISDYCKRS 381

Query: 239 DPQHVEIIQGI-ERGDALPGLRSYADIAETARKVGFEVVKEKD 280
            P   E    I +RG  L  + +Y  + + A   GF+ V  +D
Sbjct: 382 GPPSPEFEAYIGQRGYDLHDVEAYGQMLKDA---GFDEVIAED 421