Jatropha Genome Database

JcCA0081131.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081131.30 - phase: 0 
         (299 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023970001 assembled CDS                                        78   5e-15
GSVIVT01009794001 assembled CDS                                        58   5e-09
GSVIVT01016875001 assembled CDS                                        55   5e-08
GSVIVT01009792001 assembled CDS                                        54   6e-08
GSVIVT01018852001 assembled CDS                                        53   1e-07
GSVIVT01015214001 assembled CDS                                        53   2e-07
GSVIVT01025873001 assembled CDS                                        50   1e-06
GSVIVT01008455001 assembled CDS                                        49   3e-06
GSVIVT01032600001 assembled CDS                                        48   6e-06

>GSVIVT01023970001 assembled CDS
          Length = 226

 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 37/42 (88%)

Query: 195 KLIGDHKADKKLIVLDVGLKHCGPCVKVYPTVVKLSRQMADT 236
           +LIGDH  D KLIVLDVGLKHCGPCVKVYPT +KLSRQMAD 
Sbjct: 150 ELIGDHDVDHKLIVLDVGLKHCGPCVKVYPTALKLSRQMADN 191


>GSVIVT01009794001 assembled CDS
          Length = 114

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 4/103 (3%)

Query: 184 VVQLHCREDVEKLIGDHKADKKLIVLDVGLKHCGPCVKVYPTVVKLSRQMADTAVFARMN 243
           VV  H  E  ++        KKL+V+D     CGPC  + P + +L+++M +  +F +++
Sbjct: 7   VVGCHSVESWKEQFQHGIESKKLVVVDFTASWCGPCRVISPFLAELAKKMPNV-IFLKVD 65

Query: 244 GDENDSCMQFLRDMNVVEVPTFLFIREGKICGRYVGSGKGELI 286
            DE ++     ++  V  +PTFLF++EG +  + VG+ + EL+
Sbjct: 66  VDELETVA---KEWEVEAMPTFLFLKEGNVVDKVVGAKREELV 105


>GSVIVT01016875001 assembled CDS
          Length = 216

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 75  IHSIEEFDEALKTAKNRLVVVEFAASNSFESSKIYPFMVDLSRTCNDVDFLLVMGDESEK 134
           IHS++EF  AL  A ++LV+VEF  +       ++P +   ++   ++ FL V  DE+  
Sbjct: 91  IHSMQEFLSALSQAGDKLVIVEFYGTWCASCRALFPKLCKTAQDYPNIIFLKVNFDEN-- 148

Query: 135 TKQLCKRENIEKVPHFSFYKGMEKIHEE 162
            K +CK  N++ +P F FY+G + + E 
Sbjct: 149 -KSMCKSLNVKMLPCFHFYRGSDGLLES 175


>GSVIVT01009792001 assembled CDS
          Length = 109

 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 50/81 (61%), Gaps = 4/81 (4%)

Query: 206 LIVLDVGLKHCGPCVKVYPTVVKLSRQMADTAVFARMNGDENDSCMQFLRDMNVVEVPTF 265
           L+V+D     CGPC  + P + +L+++M +  +F +++ DE ++     ++  V  +PTF
Sbjct: 24  LVVVDFTASWCGPCRVISPFLAELAKKMPN-VIFLKVDVDELETVA---KEWEVEAMPTF 79

Query: 266 LFIREGKICGRYVGSGKGELI 286
           LF++EG +  + VG+ + EL+
Sbjct: 80  LFLKEGNVVDKVVGAKREELV 100


>GSVIVT01018852001 assembled CDS
          Length = 152

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 207 IVLDVGLKHCGPCVKVYPTVVKLSRQMADTAVFARMNGDENDSCMQFLRDMNVVEVPTFL 266
           IV+D     CGPC  + P +V+L++++  T  F +++ DE  S      D  V  +PTF+
Sbjct: 67  IVVDFTASWCGPCRFITPFLVELAKKIP-TVTFLKVDVDELKSVA---TDWAVEAMPTFM 122

Query: 267 FIREGKICGRYVGSGKGELIGEILRYQG 294
           F+++GKI  + VG+ K  L   I ++  
Sbjct: 123 FLKQGKIVDKVVGANKDSLQQTIAKHMA 150


>GSVIVT01015214001 assembled CDS
          Length = 207

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 49  RTNFTVKATASPDTKKKPVKDERVQKIHSIEEFDEALKTAKNRLVVVEFAASNSFESSKI 108
           + N  V  T  P   +K      +  IHS +EF  AL  A ++LV+VEF  +       +
Sbjct: 59  KVNARVAETEQPKWWEKNAGPNMID-IHSTQEFLGALSQAGDKLVIVEFYGTWCASCRAL 117

Query: 109 YPFMVDLSRTCNDVDFLLVMGDESEKTKQLCKRENIEKVPHFSFYKGME 157
           +P +   +    ++ FL V  DE+   K +CK  N++ +P+F FY+G +
Sbjct: 118 FPKLCRTAEEHPEILFLKVNFDEN---KPMCKNLNVKVLPYFHFYRGAD 163


>GSVIVT01025873001 assembled CDS
          Length = 139

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 190 REDVEKLIGDHKADKKLIVLDVGLKHCGPCVKVYPTVVKLSRQMADTAVFARMNGDENDS 249
           +E+ E+ + +   D K+++ +     CGPC  + P   +LS +   + +F  ++ DE   
Sbjct: 32  KENWEEKLAEASKDGKIVIANFSATWCGPCKMIAPFYCELS-EAHPSLMFLTVDVDELS- 89

Query: 250 CMQFLRDMNVVEVPTFLFIREGKICGRYVGSGKGELIGEI 289
             +F    ++   PTF F+R+G+   + VG+ K EL  +I
Sbjct: 90  --EFSSSWDIKATPTFFFLRDGQQVDKLVGANKPELQKKI 127


>GSVIVT01008455001 assembled CDS
          Length = 348

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 184 VVQLHCREDVEKLIGDHKADKKLIVLDVGLKHCGPCVKVYPTVVKLSRQMADTAVFARMN 243
           V+ +H   ++E  +       +L +L      CGPC  + P    LS +     VF +++
Sbjct: 240 VMAIHSSSELETKLKAASKTSRLAILYFTATWCGPCRYISPVFTSLSGKYP-KVVFLKVD 298

Query: 244 GDENDSCMQFLRDMNVVEVPTFLFIREGKICGRYVGSGKGELIGEILRYQG 294
               D         NV  VPTF FI+ GK   + VG  K  L  +I +Y G
Sbjct: 299 ---IDGAQDVAVSWNVSSVPTFFFIKNGKEIDKVVGVDKSALETKIAQYAG 346


>GSVIVT01032600001 assembled CDS
          Length = 136

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 201 KADKKLIVLDVGLKHCGPCVKVYPTVVKLSRQMADTAVFARMNGDENDSCMQFLRDMNVV 260
           K   +L+V+D     CGPC  + P V  ++ +  D   F +++ DE     Q   +  V 
Sbjct: 43  KESNQLMVIDFAATWCGPCKFMEPAVKSMASKYTDVD-FVKIDVDELPDVAQ---EFTVQ 98

Query: 261 EVPTFLFIREGKICGRYVGSGKGELIGEILRYQGV 295
            +PTF+ +++GK   R +G+ K EL  +I +++ V
Sbjct: 99  AMPTFVLLKKGKELERVIGAKKDELEKKIQKHRAV 133