Jatropha Genome Database

JcCA0081131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081131.20 + phase: 0 
         (253 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008738001 assembled CDS                                       143   7e-35

>GSVIVT01008738001 assembled CDS
          Length = 269

 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 90/185 (48%), Positives = 108/185 (58%), Gaps = 46/185 (24%)

Query: 1   MEKQPKSKNNILKFLPKAASAVYFHNP-PFSPNRDRRSDNNYCHRLKAHVGKGFSGPFVS 59
           MEK  KSKN ILKFLPKAAS + F N  PFSP RD +  ++                   
Sbjct: 1   MEKPAKSKNMILKFLPKAASVINFQNSTPFSPGRDHKRSSD------------------- 41

Query: 60  MIPDEVRRKPKNGSFETQEPTSPKVSCIGQIKHK-KKMVNKTKRTSPPKEIKAVSSPRDV 118
                             +PTSPKVSC+GQ+K K KK + KTKR SPPKE    S PR++
Sbjct: 42  ------------------KPTSPKVSCMGQVKDKHKKRIPKTKRASPPKE----SKPREM 79

Query: 119 KKHASKFKRLFSISAKPTAGRRSDASIYDRPPLSDRAPSLGQMKRFASGRDTFSNFDWTA 178
           KK  S  +R+F  S     GR+SDAS  D+P L DRAPSLGQMKRF+SGR+ FSNFDWTA
Sbjct: 80  KKQHSTLRRIFRSS---NLGRKSDASSDDKPSLPDRAPSLGQMKRFSSGRNAFSNFDWTA 136

Query: 179 QITPV 183
            + P+
Sbjct: 137 PVAPL 141