Jatropha Genome Database

JcCA0080871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080871.20 + phase: 0 /TE
         (706 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014104001 assembled CDS                                       166   4e-41
GSVIVT01009548001 assembled CDS                                       150   2e-36
GSVIVT01000641001 assembled CDS                                        99   9e-21
GSVIVT01010555001 assembled CDS                                        82   7e-16
GSVIVT01031724001 assembled CDS                                        74   3e-13
GSVIVT01013655001 assembled CDS                                        59   6e-09
GSVIVT01018138001 assembled CDS                                        53   6e-07

>GSVIVT01014104001 assembled CDS
          Length = 1354

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 114/182 (62%), Gaps = 13/182 (7%)

Query: 12   LRHLHVWGCPAEVWIYNQHEKKLDARTVSGFFIGYPEKSKGYRFYYPNHGTRIVKSGNAQ 71
            LRH+H+WGCPAE  IYN HEKKLD+RTVSG+FIGYP+KSKGYRFY PNH  RIV++GNA+
Sbjct: 1034 LRHIHIWGCPAEARIYNPHEKKLDSRTVSGYFIGYPDKSKGYRFYCPNHSVRIVETGNAR 1093

Query: 72   FIENSQISGSSEPRKVNVQEIQIKNPTQVDFPNXXXXXXXXXXXXRFDNMVEQXNNIPNP 131
            F+EN +ISGS+EPRKV+++EI++  P     P                  V+Q  +  N 
Sbjct: 1094 FLENGEISGSNEPRKVDIEEIRVDIPPPF-LPQEIIVPQP----------VQQVED--NE 1140

Query: 132  QNDHINDEPANNEXFTNDQVISQEIALRRSKRQRRPAISSDFVVYSLEHDCEFSIDKDPV 191
            QN+     P  N    N     Q   LRRS+R+RRPAI+ D+VV+ ++  C   +   P 
Sbjct: 1141 QNNRDGSLPLENIAIENAVEPPQPAPLRRSQRERRPAITDDYVVFLVQLACLHVLSYVPY 1200

Query: 192  SF 193
             F
Sbjct: 1201 IF 1202


>GSVIVT01009548001 assembled CDS
          Length = 849

 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 84/122 (68%)

Query: 451 FRMEKCSAGIVPIQKGDRFSKMQCPKNDLERKEMESIPYASVVGSLMYVQTCTRPDISFA 510
           F M  C  G V + KGD+     CPKNDLE+  M++IPYAS +GSLMY Q C RP+I F 
Sbjct: 558 FNMHTCKDGDVLVVKGDKLGNEHCPKNDLEKDAMKAIPYASAIGSLMYAQACIRPNIVFI 617

Query: 511 VGMLGRYQSNPGMDHWKAAKKVRRYLQGTKDHILTYRKSSHLELVGYSDSDYAGCVDSRK 570
           V +LGRY SN G  HW AAKKV RYLQ T D +L YR+  +LE+VGYS+SD+ GC D  K
Sbjct: 618 VNVLGRYLSNLGQYHWVAAKKVMRYLQRTNDFMLVYRRVDNLEVVGYSNSDFNGCSDDCK 677

Query: 571 ST 572
           ST
Sbjct: 678 ST 679


>GSVIVT01000641001 assembled CDS
          Length = 947

 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 482 KEMESIPYASVVGSLMYVQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVRRYLQGTKD 541
           K+++SI Y  +VGSLMY+ T TRPDI  +V ++ RY  NP   H+ AAKK+ RYLQGTKD
Sbjct: 229 KKVDSIIYKQIVGSLMYL-TATRPDIMHSVSLISRYMENPTELHFLAAKKICRYLQGTKD 287

Query: 542 HILTYRKSSHLELVGYSDSDYAGCVDSRKST 572
             L Y+K    +L+G++DSDYAG  D+R+ST
Sbjct: 288 FGLFYKKGKRSDLIGFTDSDYAGDQDNRRST 318


>GSVIVT01010555001 assembled CDS
          Length = 147

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 5/114 (4%)

Query: 300 MDVKTAFFNGVLXEEVYMDQPEGFVVTGKENLMCKLKKSIYGLKQASRQWYLKFNNTITS 359
           MDVK AF NG L EEVYM  P G  V  + N +C L++++YGLKQA R W+ KF++TI  
Sbjct: 1   MDVKNAFLNGDLSEEVYMQPPPGLSV--ESNKVCHLRRALYGLKQAPRAWFAKFSSTIFR 58

Query: 360 YGFIENTVDRCIYMKVSGSKLIMLVLYVDDILLSANDVGLLHDVKGFLSKNFEM 413
            G+  +  D  ++++ +    I+L+LY +      + +G    ++ F S  F +
Sbjct: 59  LGYTASPYDSALFLRRTDKGTILLLLYSNT---KTSPLGHNRPLRNFKSSTFNI 109


>GSVIVT01031724001 assembled CDS
          Length = 1135

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 7/130 (5%)

Query: 443  YIDKVLERFRMEKCSAGIVPIQKGDRFSKMQCPKNDLERKEMESIPYASVVGSLMYVQTC 502
            YI  +L+R  + +      P+  G   S       D  R E  ++ Y S+VG+L Y  T 
Sbjct: 950  YICDLLQRAGLSESKLVTSPMAVGHVLSIA-----DGTRFEDPTL-YRSLVGALQYC-TI 1002

Query: 503  TRPDISFAVGMLGRYQSNPGMDHWKAAKKVRRYLQGTKDHILTYRKSSHLELVGYSDSDY 562
            TRPDI++ +    ++   P   H +A K+V RYL+G+  + L+++ SS L+L+ Y+D+D 
Sbjct: 1003 TRPDIAYTINKFFQFMHAPTSTHLQAVKRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADG 1062

Query: 563  AGCVDSRKST 572
            A C D R+ST
Sbjct: 1063 ASCPDDRRST 1072


>GSVIVT01013655001 assembled CDS
          Length = 4396

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 37/59 (62%)

Query: 514  LGRYQSNPGMDHWKAAKKVRRYLQGTKDHILTYRKSSHLELVGYSDSDYAGCVDSRKST 572
            L ++   P  DHW A K++ RYL GT DH +T R++S L L  +SDSD+AG  D   ST
Sbjct: 4258 LSQFMHQPTSDHWNAVKRLLRYLCGTLDHGITLRRTSPLALHAFSDSDWAGNKDDFTST 4316


>GSVIVT01018138001 assembled CDS
          Length = 98

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 47/77 (61%)

Query: 351 LKFNNTITSYGFIENTVDRCIYMKVSGSKLIMLVLYVDDILLSANDVGLLHDVKGFLSKN 410
           +K +  + S+GF+    D+ ++++ + S +  + +YVDDIL++++D   +  +   L+  
Sbjct: 7   VKLHRALLSFGFVSTKSDQSLFLRFTPSHITYVFVYVDDILVTSSDTTAITSLIAQLNSK 66

Query: 411 FEMKDMGEASFMIGIEI 427
           F +KD+GE  + + I++
Sbjct: 67  FSLKDLGEVHYFLVIQV 83