Jatropha Genome Database

JcCA0080871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080871.10 + phase: 0 
         (375 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023935001 assembled CDS                                       722   0.0  
GSVIVT01027580001 assembled CDS                                        54   8e-08
GSVIVT01009661001 assembled CDS                                        51   9e-07

>GSVIVT01023935001 assembled CDS
          Length = 376

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/374 (92%), Positives = 362/374 (96%), Gaps = 1/374 (0%)

Query: 2   ATPGKLKTSSSELDLDRPNIEDYLPSGVSIQEPRGKLRLRDLLDISPTLTEAAGAIVDDT 61
           A   KL +SSSELDLDRPN+EDYLPSG S+QEPRGKLRLRDLLDISPTLTEAAGAIVDD+
Sbjct: 4   APDNKLTSSSSELDLDRPNLEDYLPSG-SMQEPRGKLRLRDLLDISPTLTEAAGAIVDDS 62

Query: 62  FTRCFKSNPPEPWNWNIYLFPLWCCGVVCRYGILFPIRVLVLTIGWIIFLSCYIPVHFLL 121
           FTRCFKSNPPEPWNWN+YLFPLWC GVV RYGILFP RVLVLT+GWIIFLS +IPVHFLL
Sbjct: 63  FTRCFKSNPPEPWNWNVYLFPLWCLGVVIRYGILFPTRVLVLTLGWIIFLSSFIPVHFLL 122

Query: 122 KGHDKLRKKLERCLVELICSFFVASWTGVVKYHGPRPSIRPKQVFVANHTSMIDFIILEQ 181
           KG+DKLRKKLERCLVELICSFFVASWTGVVKYHGPRPS RP+QVFVANHTSMIDFI+LEQ
Sbjct: 123 KGNDKLRKKLERCLVELICSFFVASWTGVVKYHGPRPSRRPQQVFVANHTSMIDFIVLEQ 182

Query: 182 MTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKDREIVTKKLRDHVQGADNNPLLI 241
           MTAFAVIMQKHPGWVGLLQSTILESVGCIWFNR+EAKDREIV +KLRDHVQGADNNPLLI
Sbjct: 183 MTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRTEAKDREIVARKLRDHVQGADNNPLLI 242

Query: 242 FPEGTCVNNHYTVMFKKGAFELGCTVCPIAIKYNKIFVDAFWNSRKQSFTMHLLQLMTSW 301
           FPEGTCVNNHYTVMFKKGAFELGCTVCPIAIKYNKIFVDAFWNS+KQSFTMHLLQLMTSW
Sbjct: 243 FPEGTCVNNHYTVMFKKGAFELGCTVCPIAIKYNKIFVDAFWNSKKQSFTMHLLQLMTSW 302

Query: 302 AVVCDVWYLEPQNLKPGETPIEFAERVRDIISVRAGLKKVPWDGYLKYSRPSPKHRERKQ 361
           AVVCDVWYLEPQ LKPGETPIEFAERVRDIIS+RAGLKKVPWDGYLKYSRPSPKHRE+KQ
Sbjct: 303 AVVCDVWYLEPQTLKPGETPIEFAERVRDIISLRAGLKKVPWDGYLKYSRPSPKHREQKQ 362

Query: 362 QSFAESVLQRLEEK 375
           QSFA+SVL+RLEEK
Sbjct: 363 QSFADSVLRRLEEK 376


>GSVIVT01027580001 assembled CDS
          Length = 401

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 14/185 (7%)

Query: 157 RPSIRPKQ-VFVANHTSMIDFIIL-EQMTAFAVIMQKHPG--WVGLLQSTILESVGCIWF 212
           RP+ R    + V+NH S ++ I    ++    V  + H    +VG    TI+ ++  I+ 
Sbjct: 25  RPASRETAPIVVSNHVSYVEPIFFFYELFPTIVASESHDSLPFVG----TIIRAMQVIYV 80

Query: 213 NRSEAKDREIVTKKLRDHVQGADNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPIAI 272
           NR     R+    +++          +L+FPEGT  N    + F+ GAF  G  + P+ +
Sbjct: 81  NRFSQSSRKQAVNEIKKKASCERYPRVLLFPEGTTTNGRVIISFQLGAFIPGYPIQPVVV 140

Query: 273 KYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYL---EPQNLKPGETPIEFAERVR 329
           +Y  I  D  W     S    + ++ T +    +V YL    P   K  E  + FA+R  
Sbjct: 141 RYPHIHFDQSWG--HISLGRLMFRMFTQFHNFMEVEYLPVISPLENK-KENAVHFAKRTS 197

Query: 330 DIISV 334
             I+ 
Sbjct: 198 HAIAT 202


>GSVIVT01009661001 assembled CDS
          Length = 374

 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 15/187 (8%)

Query: 161 RPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNR-SEAKD 219
           RP  + ++NH S +D I+    ++F   + K       L   I + +GC++  R S++ D
Sbjct: 170 RPGAI-ISNHVSYLD-ILYHMSSSFPSFVAKRSVAKLPLIGLISKCLGCVYVQRESKSSD 227

Query: 220 REIVTKKLRDHVQGADNNP----LLIFPEGTCVNNHYTVMFKKGAFELGCTVCPIAIKYN 275
            + V   + + V  A  N     +++FPEGT  N  + + FK GAF     V P+ ++Y 
Sbjct: 228 FKGVAGVVTERVCEAHQNKFAPMMMLFPEGTTTNGGFLLPFKTGAFLAKAPVLPVILRYP 287

Query: 276 KIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVW----YLEPQNLKPGETPIEFAERVRDI 331
                  W+S   S   H++ L   +    +V     Y+  Q  K  + P  +A  VR +
Sbjct: 288 YQRFSPAWDS--ISGVRHVIFLFCQFVNHIEVTRLPVYIPSQQEK--DDPKLYANNVRKL 343

Query: 332 ISVRAGL 338
           ++    L
Sbjct: 344 MASEGNL 350