Jatropha Genome Database

JcCA0080751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080751.20 - phase: 0 /partial
         (413 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01006780001 assembled CDS                                        51   1e-06

>GSVIVT01006780001 assembled CDS
          Length = 630

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 23/192 (11%)

Query: 56  ALMERWNDCTHTLVFGFGKMTLTPVDYAAITGLHFTGPVPPLDARYQTVAIGAQLVRSLL 115
           AL+ERW   T+T     G+MT+T  D A + GL   G  P +   Y    +   +   LL
Sbjct: 81  ALVERWRRETNTFHLNVGEMTVTLEDVAYLLGLAIDGE-PVMGVTY---TMCDTICEKLL 136

Query: 116 GVTTQTRYTVQGCMSYETVFRFWAERIRTRLEAWRELPEDVRPAAPAYTREERDQAAWSF 175
           G    +  T  G +        W +      E++ + PED    AP    E R +A   +
Sbjct: 137 GKAPDSGSTSGGMVKLS-----WLK------ESFSQCPED----APMEEIERRTRA---Y 178

Query: 176 LFYIISSQLLCTSQNKGDPAV-LECLRDLSQVGSFDWATLGLAHLYHGLDVWTHGSGESN 234
           L Y++ S +  T+     P + L    +  Q  ++ W    L+ LY  L   +  S  + 
Sbjct: 179 LLYLVGSTIFSTTTGNKVPVMYLPLFENFDQASNYAWGAAALSFLYRALGNASLKSQSTV 238

Query: 235 WLFIRPLEVWSY 246
              +  L+ WSY
Sbjct: 239 SGCLTLLQCWSY 250